DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ced-6 and numb

DIOPT Version :9

Sequence 1:NP_001246225.1 Gene:ced-6 / 35971 FlyBaseID:FBgn0029092 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001260291.1 Gene:numb / 34263 FlyBaseID:FBgn0002973 Length:556 Species:Drosophila melanogaster


Alignment Length:599 Identity:102/599 - (17%)
Similarity:196/599 - (32%) Gaps:181/599 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 YQPANSGGTSG--GSKAAAKMAQLKFWNKQNSSKQQQQDKDKDAADGGNNTSGGGTGSNSNGDAK 81
            ::|...|.|.|  |.....|.|..:|..|......:.:...:|:             .....|..
  Fly     9 HEPLERGFTRGKFGDVKNGKSASFRFSKKSPKKMDRLRRSFRDS-------------FRRRKDRV 60

  Fly    82 SEAKNGKRNWLHTPEQLISGHAVYLVKFFGNLSVDQPKGIEVVKEAIRKLQFAQQMKKAETGTQE 146
            .|:.. ...|....|.:.|....:.||:.|.:.|.:.:|::|.:||::.|:  |..::...|.  
  Fly    61 PESSK-PHQWQADEEAVRSATCSFSVKYLGCVEVFESRGMQVCEEALKVLR--QSRRRPVRGL-- 120

  Fly   147 KFKKLEITISIKGVAIQEPRTHKILHQFPLYNISYCADEKGVKKFFSFIAKTVKTQDGSDPTSNG 211
                  :.:|..|:.:.:..|..::....:..:|:||.::..::.||:|.:              
  Fly   121 ------LHVSGDGLRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFSYICR-------------- 165

  Fly   212 HANGNGDGSAKVEESHECFVFISNKLASD-ITLTIGQAFDLAYRKY--------MDSTEKTNLSK 267
                  ||:.:   ...|..|::.|.:.: ::..:|.||.:...:.        :..|..|..|.
  Fly   166 ------DGTTR---RWMCHGFLACKDSGERLSHAVGCAFAVCLERKQRRDKECGVTMTFDTKNST 221

  Fly   268 AQQQINHLQQTVNVYKERLREVSAKLPKAELDALLFNLGIKDILEAP---TTEPQNGIEVASEAL 329
            ..:..:..|||:.   |||...:....:..:|      |....:..|   |.:|.|...:.....
  Fly   222 FTRTGSFRQQTLT---ERLAMATVGTNERSVD------GPGSAMPGPPAATVKPFNPFAIERPHA 277

  Fly   330 SNGKLDDDKLLIDTNSTTASTHSASPSSF-LPIVPPRNNLSSQISIGGKSNSQKMDELLLNSDSD 393
            :...|:                  ..||| |..:..::....|:|:       ::::|..|:|..
  Fly   278 TPNMLE------------------RQSSFRLSTIGSQSPFKRQMSL-------RINDLPSNADRQ 317

  Fly   394 SDF------DPRADETQEIGGTGRSAISNMFGFEP-------ANSFGQHLFSNNNDHKLQNNNSS 445
            ..|      :|.....:.:......:.:...|.:|       |:|..|.....:....|.....:
  Fly   318 RAFLTAAAGNPMQTPLRSVSPIAEVSPAKSAGADPLSAAAVAADSVSQLCQELSQGLSLLTQTDA 382

  Fly   446 LLIT------SNNNSINSSGFSSELNI------TPPLLAPPPKI--------------------- 477
            ||..      :||.|||.:..::|..:      .||.....|::                     
  Fly   383 LLAAGEDLNFNNNRSINQNIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQS 447

  Fly   478 -----------------------AAPR---------RLNSVTTGNGL---NGNTDLFGSDPFELN 507
                                   |||:         |..::.:|.|.   .|..|    |||:..
  Fly   448 IETSTELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGGGGPD----DPFDAE 508

  Fly   508 NGPNIFKQNQLNLD 521
            ...|:....||:.|
  Fly   509 WVANVAAAKQLSPD 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ced-6NP_001246225.1 PTB_CED-6 92..261 CDD:269971 30/177 (17%)
AceK 233..>304 CDD:295079 14/79 (18%)
numbNP_001260291.1 PTB_Numb 67..201 CDD:241298 31/166 (19%)
NumbF 269..374 CDD:283874 17/129 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438631
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11232
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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