DRSC/TRiP Functional Genomics Resources

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Protein Alignment ced-6 and Gulp1

DIOPT Version :10

Sequence 1:NP_001246225.1 Gene:ced-6 / 35971 FlyBaseID:FBgn0029092 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_017451882.1 Gene:Gulp1 / 314543 RGDID:1306380 Length:312 Species:Rattus norvegicus


Alignment Length:357 Identity:110/357 - (30%)
Similarity:171/357 - (47%) Gaps:77/357 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 RNWLHTPEQLISGHAVYLVKFFGNLSVDQPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKKLEI 153
            :.|:|.||.|...:..|..||.|:..|:||||.|||::|:|||:||:.:||:|   .:|..|:|:
  Rat    11 KTWMHMPEALSKHYVPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIKKSE---GQKIPKVEL 72

  Fly   154 TISIKGVAIQEPRTHKILHQFPLYNISYCADEKGVKKFFSFIAKTVKTQDGSDPTSNGHANGNGD 218
            .|||.||.|.||:|.::.|...|:.||:|||:|..|:.|:||.|        |..||        
  Rat    73 QISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICK--------DSESN-------- 121

  Fly   219 GSAKVEESHECFVFISNKLASDITLTIGQAFDLAYRKYMDSTEKTNLSKAQQQINHLQ------- 276
                   .|.||||.|.|.|.:|||||||||||||||:::|..|.  .:.::||..:|       
  Rat   122 -------KHLCFVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKD--VETRKQIAGMQKRSSRGS 177

  Fly   277 -------QTVNV-YKERLREVSAKLPKAELDALLFNLGIKDILEAPTTEPQNGIEVASEALSNGK 333
                   :|.|: .|.:::::..:|...::                ::.|..|:.|.|.:..   
  Rat   178 RCWIQDLETENMELKNKVQDLENRLRTTQV----------------SSTPAGGVTVTSPSTD--- 223

  Fly   334 LDDDKLLIDTNSTTASTH----SASPSSFLPIVPPRNNLSSQISIGGKSNSQKMDELLLNS-DSD 393
                  :.|....:..:|    ||...:.||.:|.|::...:...|    ::..|.....: |..
  Rat   224 ------IFDMIPFSPISHPSPTSAGNGTQLPPIPSRSSEIKRDLFG----AEPFDPFNCGAGDFP 278

  Fly   394 SDFDPRADETQEIGGTGRSAISNMFGFEPANS 425
            .|...:.||.||....|.:....:|..:|.:|
  Rat   279 PDIQSKLDEMQEGFKMGLTLEGTVFCLDPLDS 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ced-6NP_001246225.1 PTB_CED-6 92..261 CDD:269971 77/168 (46%)
Gulp1XP_017451882.1 PTB_CED-6 14..157 CDD:269971 77/168 (46%)

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