DRSC/TRiP Functional Genomics Resources

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Protein Alignment ced-6 and appl2

DIOPT Version :10

Sequence 1:NP_001246225.1 Gene:ced-6 / 35971 FlyBaseID:FBgn0029092 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001121547.1 Gene:appl2 / 100000135 ZFINID:ZDB-GENE-081016-2 Length:662 Species:Danio rerio


Alignment Length:229 Identity:50/229 - (21%)
Similarity:82/229 - (35%) Gaps:49/229 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 GSNSNGDAKSEAKNGKRNWLHTPEQLISGHAVYLVKFFGNLSVDQPKGIEVVKEAIRKLQFAQQM 137
            |.....|.:|:          |.:.|:  ..|:.|:|.|:::|......||:.||:|::..|:.:
Zfish   473 GETEEDDDESD----------THDSLL--QQVFAVRFLGSMAVRSGHTQEVIYEAMRQVLAARAI 525

  Fly   138 KKAETGTQEKFKKLE--ITISIKGVAIQEPRTHKILHQFPLYNISYCADEKGVKKFFSFIAKTVK 200
            ...       ||..|  :.||...:.:.:|:|......|.|..:|..|..:..::...|:.::..
Zfish   526 HNI-------FKTTESHLMISSSCIRLIDPQTQVTKISFQLQEVSEFAAHQENERLMGFVVRSSA 583

  Fly   201 TQDGSDPTSNGHANGNGDGSAKVEESHECFVFISNKLASDITLTIGQAFDL--------AYRKYM 257
            ..|                    |.|...|||.||.....|..||..|.::        |..:.|
Zfish   584 EDD--------------------EPSFSVFVFESNTEGEKICYTINLAKEIADARKDPEALAQLM 628

  Fly   258 DSTEKTNLSKAQQQINHLQQTVNVYKERLREVSA 291
            .|...||..|.....|....|.....:..:|..|
Zfish   629 KSMPLTNDGKFLLLDNETGDTAETAGQEQQESEA 662

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ced-6NP_001246225.1 PTB_CED-6 92..261 CDD:269971 40/178 (22%)
appl2NP_001121547.1 BAR 21..235 CDD:472257
BAR-PH_APPL 253..375 CDD:270067
PTB_APPL 488..614 CDD:269980 36/154 (23%)
Blue background indicates that the domain is not in the aligned region.

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