DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdk and PKP2

DIOPT Version :9

Sequence 1:NP_001097240.1 Gene:Pdk / 35970 FlyBaseID:FBgn0017558 Length:422 Species:Drosophila melanogaster
Sequence 2:NP_011456.5 Gene:PKP2 / 852821 SGDID:S000003027 Length:491 Species:Saccharomyces cerevisiae


Alignment Length:440 Identity:92/440 - (20%)
Similarity:173/440 - (39%) Gaps:106/440 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 MLDFYSGFNPSPLSIKQFMDFGQNACEK------KSYIFLRKELPVRLANIMKEIALLPDNLLHT 79
            :::.|...:|:|:|:.|...:..::.:.      .|..|:::||.:|:|:.:.::..||.|:::.
Yeast    68 LVENYLKRSPNPVSLTQLAQYYDDSTKLTRTKIINSGKFVKEELVIRIAHKLNQLQQLPFNVVNN 132

  Fly    80 RSVSEVSSWYVKSFEDVLVYEKAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGV-------IEM 137
            ....:|...|...||....|    ||...|:......|.|:|        |.:|.       :.|
Yeast   133 FHFVQVYESYYNIFESFRKY----PTIRTLEDASQFADFIKN--------MLEGFNTLNLPHLIM 185

  Fly   138 KENEGGQVDAPTESSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGGRH-----IGCLDPACD 197
            ...|...:|......:...|..|..:|||.|:::.:|..:...  :..|:.     :|.:...|.
Yeast   186 GALECTILDLYPREKMDQLLSDLLRARISRRLIVEEHVSITAN--YTSGKEENTLVLGDIFQECS 248

  Fly   198 LSDVVRDAYENA-RFLCDQYY--LTSPALEIQQHSSEPGDNLPIRTVYVPSHLYYMLFELFKNSM 259
            ....:.:|.|.: :|:.|.|:  :..|...|:      ||. .:...::|:||.|:|.|:.:|:.
Yeast   249 AKKYLLEASEESQKFIQDMYFKDIPMPEFIIE------GDT-QLSFYFLPTHLKYLLGEILRNTY 306

  Fly   260 RAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGI------------------------- 299
            .|.::|:.....:...|:.|.:....|....:|||:.||:                         
Yeast   307 EATMKHYIRKGLEKPEPIIVTVVSNDESYLFRISDKAGGVLHDDENLWSFGKSKERAQESLNNFH 371

  Fly   300 --PRSQTDQLFKYMYSTAPQPSK-SDLHTVPLAGY------------------------------ 331
              |..||..::..::|.....|| ..|.::.|..|                              
Yeast   372 KLPGLQTVSIYDEVHSHTKYNSKLKSLQSITLKPYMHTSLEPMSYPSIINGHIKYETPLIELLKR 436

  Fly   332 ------GYGLPISRLYARYFHGDIVLLSCEGFGTDAIIYLKALSDEANEL 375
                  |.||.:.::||.|::||:.|.|..|:|||.::.|..|.....:|
Yeast   437 SFRYKLGIGLAMCKVYAEYWNGDLSLHSMPGYGTDVVLKLGNLMKHTKKL 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdkNP_001097240.1 BCDHK_Adom3 32..193 CDD:402181 37/178 (21%)
HATPase_PDK-like 197..366 CDD:340406 49/235 (21%)
PKP2NP_011456.5 BCDHK_Adom3 79..239 CDD:402181 36/173 (21%)
HATPase_PDK-like 248..477 CDD:340406 49/235 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343855
Domainoid 1 1.000 61 1.000 Domainoid score I2523
eggNOG 1 0.900 - - E1_COG0642
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000382
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R894
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.770

Return to query results.
Submit another query.