DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8800 and CG13708

DIOPT Version :9

Sequence 1:NP_610483.1 Gene:CG8800 / 35962 FlyBaseID:FBgn0033408 Length:188 Species:Drosophila melanogaster
Sequence 2:NP_001261433.1 Gene:CG13708 / 38582 FlyBaseID:FBgn0035577 Length:1301 Species:Drosophila melanogaster


Alignment Length:230 Identity:53/230 - (23%)
Similarity:88/230 - (38%) Gaps:75/230 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SKATTIKEALKRWEEREQQNSLTAKVIDLQFQWPPIEKMDSTLGTLVQCERISMSTNMIEKIFGL 66
            |..|:| .||::...:.:|.||:|....: ||               |...:.:..|.||:|..|
  Fly   441 SVMTSI-SALEQLSIKNKQLSLSASYGSI-FQ---------------QLVFLDLYDNQIERIANL 488

  Fly    67 SGMKCLKVLSLSRNYIKQISGLEAVAETLEELWL----------SYNLIEKIKGLT--------- 112
            .|:..|.||.|.:|.|..|.||.::.:||..|.|          ..|.::::|.|.         
  Fly   489 DGLPSLSVLLLGKNRITDIGGLSSLKDTLRVLDLHGNKLTSLGSRINCLQQLKSLNLAGNQIRQI 553

  Fly   113 ------GLKCLKVLYISNNLIKDWSEFNRLAEIESL----------EDL------------VVVG 149
                  ||:||:.|.:..|.::..:.|..|..:|.|          :|:            .:..
  Fly   554 NQQDFLGLRCLRELNLKRNKLRRINGFQHLVALERLWLCHNDLHRVDDMASIARATRLLEVTIEN 618

  Fly   150 NPLSEGLDEPTWRAEC----IKRLPTIRKLDGEPV 180
            ||:|       ...:|    :..||.::.|...|:
  Fly   619 NPVS-------LAGDCVSFLVSYLPLLQTLSQMPI 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8800NP_610483.1 PPP1R42 37..180 CDD:411060 41/193 (21%)
leucine-rich repeat 50..71 CDD:275380 6/20 (30%)
leucine-rich repeat 95..116 CDD:275380 8/45 (18%)
leucine-rich repeat 117..141 CDD:275380 5/23 (22%)
CG13708NP_001261433.1 LRR_RI <428..572 CDD:238064 39/147 (27%)
leucine-rich repeat 449..471 CDD:275380 7/37 (19%)
leucine-rich repeat 472..493 CDD:275380 6/20 (30%)
LRR_8 475..527 CDD:290566 19/51 (37%)
leucine-rich repeat 494..516 CDD:275380 9/21 (43%)
LRR_8 516..574 CDD:290566 13/57 (23%)
leucine-rich repeat 517..539 CDD:275380 4/21 (19%)
leucine-rich repeat 540..563 CDD:275380 4/22 (18%)
LRR_4 564..604 CDD:289563 8/39 (21%)
leucine-rich repeat 564..585 CDD:275380 5/20 (25%)
leucine-rich repeat 611..637 CDD:275380 5/32 (16%)
LRR_9 <1059..1153 CDD:258718
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0531
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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