DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8800 and Lrguk

DIOPT Version :9

Sequence 1:NP_610483.1 Gene:CG8800 / 35962 FlyBaseID:FBgn0033408 Length:188 Species:Drosophila melanogaster
Sequence 2:XP_017448017.1 Gene:Lrguk / 296968 RGDID:1308226 Length:1271 Species:Rattus norvegicus


Alignment Length:165 Identity:49/165 - (29%)
Similarity:87/165 - (52%) Gaps:10/165 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NSLTAKVIDLQFQWPPIEKMDSTLGTLVQCERISMSTNMIEKIFGLSGMKCLKVLSLSRNYIKQI 85
            ::||..::|..    .||:: :.|...:....:|::.|.|..|.|| |...:||||:|.|.|:.|
  Rat   215 HTLTQLILDNN----EIEEI-TGLEKCISLTHLSLAGNRITTIKGL-GTLPIKVLSVSNNQIETI 273

  Fly    86 SGLEAVAETLEELWLSYNLIEKIKGLTGLKCLKVLYISNNLIKDWSEFNRLAEIESLEDLVVVGN 150
            :|||.: :.|:.|.||:|.|..:.||.....|:|:.:.:|.||:.||...:..:..|..|.::.|
  Rat   274 TGLEEL-KALQNLDLSHNQISSLHGLENHDLLEVINLEDNKIKELSEIEYIENLPILRVLNLLRN 337

  Fly   151 PLSEGLDEPTWRAECIKRLPTIRKLDGEPVVLNEE 185
            |:.   .:|.:....|..|..:.:||.:.:.:.|:
  Rat   338 PIQ---TKPEYWFFVIFMLLRLTELDQQKIKVEEK 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8800NP_610483.1 PPP1R42 37..180 CDD:411060 45/142 (32%)
leucine-rich repeat 50..71 CDD:275380 7/20 (35%)
leucine-rich repeat 95..116 CDD:275380 8/20 (40%)
leucine-rich repeat 117..141 CDD:275380 7/23 (30%)
LrgukXP_017448017.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0531
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.