DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8800 and LRGUK

DIOPT Version :9

Sequence 1:NP_610483.1 Gene:CG8800 / 35962 FlyBaseID:FBgn0033408 Length:188 Species:Drosophila melanogaster
Sequence 2:NP_001352629.1 Gene:LRGUK / 136332 HGNCID:21964 Length:1131 Species:Homo sapiens


Alignment Length:187 Identity:49/187 - (26%)
Similarity:88/187 - (47%) Gaps:31/187 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NSLTAKVIDLQFQWPPIEKMDSTLGTLVQCE---RISMSTNMIEKIFGLSGMKCLKVLSLSRNYI 82
            ::||..::|    ...||::..    |..|.   .:|::.|.|..|.||:.:. :|:|.||.|.|
Human   215 HALTKLILD----GNEIEEISG----LEMCNNLIHLSLANNKITTINGLNKLP-IKILCLSNNQI 270

  Fly    83 KQISGLEAVAETLEELWLSYNLIEKIKGLTGLKCLKVLYISNNLIKDWSEFNRLAEIESLEDLVV 147
            :.|:|||.: :.|:.|.||:|.|..::||.....|:|:.:.:|.|.:..|...:..:..|..|.:
Human   271 EMITGLEDL-KALQNLDLSHNQISSLQGLENHDLLEVINLEDNKIAELREIEYIKNLPILRVLNL 334

  Fly   148 VGNPLSE----------------GLDEPTWRAECIKRLPTIRKLDGEPVVLNEEPQL 188
            :.||:.|                .||:...:.|  :::..:.|.|..|.|:..:..|
Human   335 LENPIQEKSEYWFFVIFMLLRLTELDQKKIKVE--EKVSAVNKYDPPPEVVAAQDHL 389

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG8800NP_610483.1 PPP1R42 37..180 CDD:411060 43/161 (27%)
leucine-rich repeat 50..71 CDD:275380 7/23 (30%)
leucine-rich repeat 95..116 CDD:275380 8/20 (40%)
leucine-rich repeat 117..141 CDD:275380 5/23 (22%)
LRGUKNP_001352629.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 73..96
LRR 1 129..149
leucine-rich repeat 131..150 CDD:275380
LRR <150..>337 CDD:227223 38/131 (29%)
LRR 2 150..171
leucine-rich repeat 151..172 CDD:275380
LRR 3 172..193
leucine-rich repeat 173..194 CDD:275380
LRR 4 194..215 49/187 (26%)