DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mad1 and mdf-1

DIOPT Version :9

Sequence 1:NP_610477.2 Gene:Mad1 / 35954 FlyBaseID:FBgn0026326 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_505462.1 Gene:mdf-1 / 179338 WormBaseID:WBGene00003160 Length:679 Species:Caenorhabditis elegans


Alignment Length:698 Identity:145/698 - (20%)
Similarity:261/698 - (37%) Gaps:175/698 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 KNEASRATAELNQLRLKFD-ESTLKLQKEKYLQKE--------DARDVHLCIN------NELSEY 196
            ::||:...||  :::.:|. |..||.:.||.|::.        :||.::..:.      .||:..
 Worm    15 ESEATMLFAE--EIKKQFKREFPLKAETEKKLKQATFRRHAPVEARKINFDMTLSPVAPIELASA 77

  Fly   197 RRIAQRADLELQSTRNELERLRQLNEELQAR-ASGFEQLRANHEK------QTQSLK-VANDRIQ 253
            ::..:.|..:|.:.|.:.||::|:.:..||: |.....|..|.||      |.:.|| ..:|.|.
 Worm    78 KKEKESAQRQLVTLREDHERMKQMMQTNQAKLAEKTIDLETNREKMLELQEQVELLKQERDDTIA 142

  Fly   254 ELEFEI-------QSYSDWKEVVKTSRE-------------------RLASVPDLLAEVEHLRSH 292
            |....:       :.|..|..:..|..|                   ||.:||..:........:
 Worm   143 ECNRNVDIWTAFGKKYYTWYSMANTQLESVKLYIDNDGKFENDEEVTRLNAVPRQMYRALEQFDY 207

  Fly   293 NKHLNTLIGDKLLLEEQVYDYKTR------LEREEGARAEAASL-----QVKLLHMEQE----LK 342
            :......:|...|||.:...:.||      .|||. |||:.::.     |.....:|..    :.
 Worm   208 DDETVEELGSGSLLEYEGVSFATRRPPSPETEREI-ARADQSAANFTLPQSNFTLLEDSNNTIMP 271

  Fly   343 EWVKVAQDHCLANTLVSPMALRSRIEQLLKE-----DIIHVAEKTSSASDT-KHLNTTIRDLEHK 401
            |...:..|.|:||..:.......:|::||.|     |.::|:...:..|.. :..|.|: :.|.|
 Worm   272 EDQTMMTDGCIANRSLIDYEKDEKIQRLLLENSVLKDRLNVSSGRAERSMIFEERNRTL-EFEKK 335

  Fly   402 CAIY------LKNIEDLNIGLKRHK-NFKERLQRKLITVSKERDFYKQLVENFDKDTTLS---NA 456
             |::      ...||.:.||...:. |..|::.......:|:.....::.:...|:..|.   .|
 Worm   336 -ALHKQLDSTFSEIEAIRIGQAGNLFNIDEKIPSSSDNSAKQLQLIDRITQLITKNNQLEKDFEA 399

  Fly   457 SVADMTQDMQVRV----RMEVLERTVTGYKDMCATLEREIQSLRQQELVNEPAGEGYDSVKKEL- 516
            :.:.||:.|:...    |.|.||...:.            :.:|.|:|.||         |..| 
 Worm   400 ATSRMTKVMRESTDCARRNERLEDAFSS------------ERVRSQDLENE---------KSRLS 443

  Fly   517 DTLRMENDRLRRRKEELE--MEMMHRCLRGDFNM---------------KDFKVVHFSENPAAEA 564
            :.|.:.|:.|.:.|::||  ...:...|.....:               ...::.|.:.||..:|
 Worm   444 EQLELSNNELEKVKKQLEESQSQLDEVLSMTLTVPASEPASLPAPTDAGNSTQIFHMASNPLQDA 508

  Fly   565 YESTKNMMEKLQAEIERLKRRNKKLEDDNEQRLNETTSTGGMTLNFKEFNQLQAELESANGKMRK 629
            :.           |.:..:.|.:||.|          :..|.....:||.:|:..|.....:.:.
 Worm   509 HN-----------EFQASESRKRKLTD----------APAGDQWREQEFAELEKRLYDCESEKKV 552

  Fly   630 MRDCFKAARE---EFRDVCYMLLGYRI--------------DRIGANSNYRISSMFAEGPD-DYL 676
            :...:...:|   :||.||..|.|.:|              :..|.::...:...|...|. |.|
 Worm   553 LESSYNLHKELSSKFRQVCIALTGLQIKLKDADEGICTVQSEYEGGSAQQFVFKYFYGTPRIDML 617

  Fly   677 DISLNESNCLALLESPYSHTFNPPIDQQLAASN-FPAFFSALTLELFQ 723
            |:|     |.:..|  ....:.|.:.:.:...| .|||.:|:||:|.|
 Worm   618 DVS-----CESTTE--MLRKWEPLMKKYIGDRNSIPAFLAAMTLQLEQ 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mad1NP_610477.2 MAD 80..726 CDD:283261 145/698 (21%)
mdf-1NP_505462.1 SMC_prok_B 72..>146 CDD:274008 21/73 (29%)
SMC_prok_B <284..>471 CDD:274008 43/209 (21%)
MAD <392..656 CDD:283261 62/312 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23168
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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