DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pkn and Prkch

DIOPT Version :10

Sequence 1:NP_001097237.1 Gene:Pkn / 35950 FlyBaseID:FBgn0020621 Length:1501 Species:Drosophila melanogaster
Sequence 2:NP_112347.1 Gene:Prkch / 81749 RGDID:621888 Length:683 Species:Rattus norvegicus


Alignment Length:400 Identity:175/400 - (43%)
Similarity:247/400 - (61%) Gaps:25/400 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly  1105 NQYELNVAKAAAAASV----YSPSSSTTSNSNQQQQQQRRNVARGLQYRESGGLETGRAGKQPPN 1165
            |..||  ||..|...:    .||:|...|.|..::|.:..:       :|..|:....:.:    
  Rat   298 NAVEL--AKTLAGMGLQPGNISPTSKLISRSTLRRQGKEGS-------KEGNGIGVNSSSR---- 349

  Fly  1166 AGMLSMDNFRLLSVLGRGHFGKVILSQLRSNNQYYAIKALKKGDIIARDEVESLLSEKRIFEVAN 1230
               ..:|||..:.|||:|.||||:|::::...:.||:|.|||..|:..|:||..::||||..:|.
  Rat   350 ---FGIDNFEFIRVLGKGSFGKVMLARIKETGELYAVKVLKKDVILQDDDVECTMTEKRILSLAR 411

  Fly  1231 AMRHPFLVNLYSCFQTEQHVCFVMEYAAGGDLMMHIH-TDVFLEPRAVFYAACVVLGLQYLHENK 1294
              .||||..|:.||||...:.||||:..|||||.||. :..|.|.||.||||.::..|.:|||..
  Rat   412 --NHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHEKG 474

  Fly  1295 IIYRDLKLDNLLLDTEGYVKIADFGLCKEGMGFGDRTGTFCGTPEFLAPEVLTETSYTRAVDWWG 1359
            ||||||||||:|||.||:.|:||||:||||:..|..|.||||||:::|||:|.|..|..|||||.
  Rat   475 IIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWA 539

  Fly  1360 LGVLIFEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSLEAIAVMRRLLRKNPERRLGSSERDA 1424
            :|||::|||.|.:||..::|:::|::|:||||.||.:|..:|..:::..:.|||..||||..:..
  Rat   540 MGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGG 604

  Fly  1425 E-DVKKQAFFRSIVWDDLLLRKVKPPFVPTINHLEDVSNFDEEFTSEKAQLTPPKEPRHLTEEEQ 1488
            | ::.:..||:.|.|..|..|:::|||.|.|...|||||||.:|..|:..|||..| .||....|
  Rat   605 EHEILRHPFFKEIDWVQLNHRQLEPPFRPRIKSREDVSNFDPDFIKEEPVLTPIDE-GHLPMINQ 668

  Fly  1489 LLFQDFSYTA 1498
            ..|::|||.:
  Rat   669 DEFRNFSYVS 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PknNP_001097237.1 HR1_PKN_1 131..194 CDD:212012
HR1_PKN_2 243..309 CDD:212013
HR1_PKN_3 340..414 CDD:212015
C2 530..611 CDD:472691
STKc_PKN 1174..1499 CDD:270741 159/326 (49%)
PrkchNP_112347.1 C2_PKC_epsilon 8..140 CDD:175981
C1_nPKC_epsilon-like_rpt1 166..226 CDD:410385
C1_nPKC_epsilon-like_rpt2 244..298 CDD:410388 175/399 (44%)
STKc_nPKC_eta 359..681 CDD:270742 158/322 (49%)
Blue background indicates that the domain is not in the aligned region.

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