DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pkn and R12G8.1

DIOPT Version :9

Sequence 1:NP_001097237.1 Gene:Pkn / 35950 FlyBaseID:FBgn0020621 Length:1501 Species:Drosophila melanogaster
Sequence 2:NP_507486.1 Gene:R12G8.1 / 187844 WormBaseID:WBGene00011254 Length:164 Species:Caenorhabditis elegans


Alignment Length:136 Identity:30/136 - (22%)
Similarity:51/136 - (37%) Gaps:49/136 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   999 PSPLVEYPEDDDEYLYRGSNENLGTRLH--SSHSSSAGD-------RFCVEVIPQLGKLYVGSSQ 1054
            |:|.::.|.     :.|.|:   ||::|  |.|...|..       .||.:.|..:||       
 Worm     3 PAPELQIPT-----VTRQSD---GTKIHEISGHKFKAVGLAQPTFCSFCSKFIYGVGK------- 52

  Fly  1055 QQYA---------QQSSPIIQEPATPTIYGNSAAAGAPQFPQPAQ------RQEKQPPQQQPIYA 1104
            |.|.         ::...:|....|   :|.|:.|     |.||:      |:.:...::.|  :
 Worm    53 QGYKCLGCETVVHKRCHALITARCT---FGPSSRA-----PVPAETTNLKTRRSRSASEEPP--S 107

  Fly  1105 NQYELN 1110
            |.:..|
 Worm   108 NTHHFN 113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PknNP_001097237.1 HR1_PKN_1 131..194 CDD:212012
HR1_PKN_2 243..309 CDD:212013
HR1_PKN_3 340..414 CDD:212015
C2 530..611 CDD:301316
STKc_PKN 1174..1499 CDD:270741
S_TKc 1174..1433 CDD:214567
R12G8.1NP_507486.1 C1_1 27..79 CDD:278556 11/61 (18%)
C1_1 110..160 CDD:278556 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0694
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.