DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pkn and prkcha

DIOPT Version :9

Sequence 1:NP_001097237.1 Gene:Pkn / 35950 FlyBaseID:FBgn0020621 Length:1501 Species:Drosophila melanogaster
Sequence 2:NP_001116528.1 Gene:prkcha / 100144561 ZFINID:ZDB-GENE-080402-5 Length:712 Species:Danio rerio


Alignment Length:373 Identity:168/373 - (45%)
Similarity:235/373 - (63%) Gaps:26/373 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly  1145 GLQYRESGGL--------------ETGRAGKQPPNAGMLSMDNFRLLSVLGRGHFGKVILSQLRS 1195
            ||..|.|.||              |.|::.|:  ....|.:.||.||.|||:|.||||:|.:|..
Zfish   310 GLTKRNSVGLAGLDAQSRTLSVRGERGQSKKE--QCLKLGISNFTLLQVLGKGSFGKVMLVRLNG 372

  Fly  1196 NNQYYAIKALKKGDIIARDEVESLLSEKRIFEVANAMRHPFLVNLYSCFQTEQHVCFVMEYAAGG 1260
            ::|.:|:|.|||..|:..|:||..::|||:..:|:.  ||:|..||.||||.:.:.||||:..||
Zfish   373 SDQVFAVKILKKDIILQDDDVECTMTEKRVLSLAST--HPYLTQLYCCFQTPERLFFVMEFVNGG 435

  Fly  1261 DLMMHIH-TDVFLEPRAVFYAACVVLGLQYLHENKIIYRDLKLDNLLLDTEGYVKIADFGLCKEG 1324
            |||.||. :..|.|.||.||.|.:...|.:||...|:||||||||:|||.:|:.|:||||:||||
Zfish   436 DLMFHIQKSRKFEENRARFYTAEITSALIFLHSKGIVYRDLKLDNVLLDKDGHCKLADFGMCKEG 500

  Fly  1325 MGFGDRTGTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIFEMLVGESPFPGDDEEEVFDSIVND 1389
            |..|..||||||||:::|||:|.|..|..:||||.||||::|||.|.:||..::|:::|:||:.:
Zfish   501 MFDGIVTGTFCGTPDYIAPEILQELLYGPSVDWWALGVLLYEMLSGHAPFEAENEDDLFESILTE 565

  Fly  1390 EVRYPRFLSLEAIAVMRRLLRKNPERRLG--SSERDAEDVKKQAFFRSIVWDDLLLRKVKPPFVP 1452
            |:.|..:||..|:.:::..|.|||.||||  ::|.....|....||..|.||.|..|.::|||.|
Zfish   566 EIIYASWLSTNAVDILKGFLTKNPSRRLGCVATEGGETAVTGHPFFTDIDWDKLDQRALEPPFKP 630

  Fly  1453 TINHLEDVSNFDEEFTSEKAQLTPPKEP--RHLTEEEQLLFQDFSYTA 1498
            .|...|||:|||.:||.|...|||..|.  ..:::::   |:.||:|:
Zfish   631 RIKTAEDVNNFDPDFTQEDPTLTPIDESILPSISQDD---FRGFSFTS 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PknNP_001097237.1 HR1_PKN_1 131..194 CDD:212012
HR1_PKN_2 243..309 CDD:212013
HR1_PKN_3 340..414 CDD:212015
C2 530..611 CDD:301316
STKc_PKN 1174..1499 CDD:270741 157/330 (48%)
S_TKc 1174..1433 CDD:214567 128/261 (49%)
prkchaNP_001116528.1 C2_PKC_epsilon 3..136 CDD:175981
C1_1 169..220 CDD:278556
C1_1 241..293 CDD:278556
S_TKc 351..611 CDD:214567 128/261 (49%)
PKc_like 355..678 CDD:304357 154/326 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583343
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0694
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R891
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.770

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