DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hig and sele

DIOPT Version :9

Sequence 1:NP_724773.1 Gene:hig / 35949 FlyBaseID:FBgn0010114 Length:958 Species:Drosophila melanogaster
Sequence 2:NP_001124070.2 Gene:sele / 558139 ZFINID:ZDB-GENE-041014-221 Length:872 Species:Danio rerio


Alignment Length:504 Identity:116/504 - (23%)
Similarity:191/504 - (37%) Gaps:140/504 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   558 DLPHGHSLQARCQELGIYKLLGESRVLC-SNGLWAPRMPSC---------------VPTTVLTNY 606
            |:|:....:..|:| | |:|.|.|...| |...|:....:|               :..|:..:|
Zfish   335 DIPYKSQCEYSCEE-G-YELKGSSTTTCTSTTEWSSEPTTCELVQCPALEKPVNGDLSCTLSFSY 397

  Fly   607 SEDSAPSIRIKIFNGSHSFEPSGVMAV-----------PPHSTVL------------MDCMYPRV 648
            ....:       |:....|..:||...           ||...|:            |.|.:|  
Zfish   398 GSKCS-------FSCGEGFILTGVSETSCTKTAEWSQEPPRCEVVQCSELANPQKGGMQCNHP-- 453

  Fly   649 RGTPEWSWTS---------WYMQYS---------TG-WSPAQEE------KA--------VRYRL 680
              ..::|:.|         :.:|.|         || |:.:|..      ||        .:...
Zfish   454 --MGQFSYQSSCEFVCDEGYKLQNSSSSTLICGATGLWNDSQPTCEIVKCKARDLTTPANAKVHC 516

  Fly   681 SIKNIENNDSGTFTCTSPRGLTNSIAVVVATST--------------CPQLTEPLAPLKLRLEG- 730
            :.:||.......::|.....|..| :..:.|||              ||:|.:|       ||| 
Zfish   517 TNENIPYESQCEYSCEEGYELKGS-STTMCTSTTEWSNEPPTCELVQCPELAKP-------LEGD 573

  Fly   731 ----NKLGQRAH-----YECPEGFRLDGAWNAT--CLASGNWSSPTPTCHAIQCPRLELDDP-HL 783
                :.:||.::     :.|.||:.|..:.::|  |.|:|:|:...|||..::|...::..| |.
Zfish   574 MYCNHPMGQFSYLSSCTFVCDEGYNLRDSSSSTLICGATGHWNDSQPTCEIVKCKEEDITPPAHA 638

  Fly   784 SLIELNTSA--WGRAVFKCQWGFKLTGPAQLDCEPSGVWSGPVPRCKVIQCVMPVAPLNGRIGGT 846
            .:...|...  ..:..:.|:.|::|.|.:...|..:..||.....|::|||    ..|:..:.|.
Zfish   639 KVHCTNEDIPYESQCEYSCEEGYELKGSSTTTCTSTTEWSSEPTICELIQC----PALDNLVNGD 699

  Fly   847 SLSQRRLTVGALVTFSCNDGHSLVGESSIICTENGQWSHSPPFCKS-QCPYPGDPPNGLIAPLKF 910
            .......:.|:..:|||.:|..|.|.|.|.||...:||..||.|:: .||...||.||..     
Zfish   700 LSCNSSFSYGSKCSFSCAEGFILQGASEISCTNTAEWSQKPPHCEAVVCPQLSDPANGYT----- 759

  Fly   911 NYDAGD-YLSVQCRPGFVQSYEG----PPERPKCQPDGRWSGPMPKCKS 954
            |..:.: :....|  .|: .::|    ..|...|..||||||.:..|::
Zfish   760 NCSSDEPFFGTIC--NFI-CFDGHQLDSNETVMCSHDGRWSGEVAVCQA 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
higNP_724773.1 PHA02927 705..952 CDD:222943 75/281 (27%)
CCP 714..768 CDD:153056 19/65 (29%)
CCP <795..828 CDD:153056 7/32 (22%)
CCP 832..891 CDD:153056 18/58 (31%)
Sushi 894..952 CDD:278512 18/62 (29%)
seleNP_001124070.2 CLECT_selectins_like 29..147 CDD:153062
EGF_CA 150..183 CDD:238011
CCP <204..248 CDD:153056
CCP 252..312 CDD:153056
Sushi 320..>354 CDD:278512 7/20 (35%)
CCP 378..433 CDD:153056 8/61 (13%)
CCP 437..497 CDD:153056 11/63 (17%)
CCP 505..559 CDD:153056 8/54 (15%)
CCP 563..623 CDD:153056 20/66 (30%)
CCP 634..>665 CDD:153056 6/30 (20%)
CCP 689..744 CDD:153056 18/58 (31%)
CCP 748..804 CDD:153056 18/63 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19325
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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