DRSC/TRiP Functional Genomics Resources

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Protein Alignment hig and Cfhr4

DIOPT Version :10

Sequence 1:NP_724773.1 Gene:hig / 35949 FlyBaseID:FBgn0010114 Length:958 Species:Drosophila melanogaster
Sequence 2:NP_001128264.1 Gene:Cfhr4 / 498241 RGDID:1564614 Length:699 Species:Rattus norvegicus


Alignment Length:511 Identity:119/511 - (23%)
Similarity:183/511 - (35%) Gaps:161/511 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 KIRCVKGKWVG-PLCATNEED-------DNGNVKFQPLYKSCHVNRIPSHLLLSYRNISVTPIPP 533
            ||:||.|||.. |.|...:..       ::|:|||.                          :||
  Rat   307 KIQCVDGKWTTLPTCVEEKRTCGDIPALEHGSVKFS--------------------------VPP 345

  Fly   534 NRGWRKTRLSKSTLLSNTEINVGWDLPHGHSLQARCQELGIYKLLGESRVLCSNGLWAPRMPSCV 598
            ..                         ||.|::..|.|  .:.::|:..|.|.:|.|| ::|.||
  Rat   346 YH-------------------------HGDSVEFTCAE--TFTMIGQRSVSCISGRWA-QLPRCV 382

  Fly   599 PTTVLTNYSEDSAPSIRIKIFNGSHSFEPSGVMAVPPHSTVLMDCMYPRVRGTPEWSWTSWYMQY 663
            .|..|   .:..||.:.:   .|::..|..|   :..:|::...|     ||:.::.::   :..
  Rat   383 ATVQL---EKCKAPRLAV---IGANKLEKDG---LNHNSSISYKC-----RGSQKYGYS---ICI 430

  Fly   664 STGWSP----AQEEKAVRYRLSIKNIENNDSGTFTCTSPRGLTNSIAVVVATSTCPQLTEPLAPL 724
            :..|.|    .::|||.                  |..|..:.|  |.|:.|:.           
  Rat   431 NGRWDPEPTCTRKEKAF------------------CPPPPQIPN--AQVIDTTV----------- 464

  Fly   725 KLRLEGNKLGQRAHYECPEGFRLDGAWNATCLASGNWSSPTPTCHA-IQC---PRLE-------- 777
             ..|:|.|:.    ..|.:|:...|.....| ..|.|.| .|.|.| |.|   |:::        
  Rat   465 -KYLDGEKVS----VLCQDGYLTQGPEEMVC-KHGRWQS-LPRCTAKITCSQPPKIDHGSIKLPR 522

  Fly   778 LDDPHLSLIELNTSAWGRAV-FKCQWGFKLTGPAQLDCEPSGVWSGPVPRC--KVIQCVMPVAPL 839
            |.|.....|:.::...|... :.|..||:::....:.|. .|.||.| |||  ...:|..|....
  Rat   523 LSDAGRDAIDSSSHEHGTTFSYVCDDGFRISKENGVTCH-MGKWSSP-PRCVESTGKCGPPPTIE 585

  Fly   840 NGRIGGTSLSQRRLTVGALVTFSCNDGHSLVGESSIICTENGQWSHSPPFCKSQCP--------- 895
            ||.|  ||||.......:.|.:.|...:.:.|...|.| :||:| ..||.|...|.         
  Rat   586 NGDI--TSLSLPVYAPLSSVEYQCQSFYKMQGSKKITC-KNGEW-EEPPKCLHACVLTEEIMRRQ 646

  Fly   896 --YPGDPPNGLIAPLKFNYDAGDYLSVQCRPGFVQSYEGPPE-RPKCQPDGRWSGP 948
              .|....|     .|....:|||:...|...: |..:|.|| |.:| .||..:.|
  Rat   647 NIIPKRTKN-----KKIYIQSGDYVEFVCLTAY-QKAQGSPEFRTQC-IDGHINYP 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
higNP_724773.1 Ig_3 612..696 CDD:464046 13/87 (15%)
PHA02927 705..952 CDD:222943 71/271 (26%)
Cfhr4NP_001128264.1 CCP 32..81 CDD:153056
PHA02831 145..>325 CDD:165176 9/17 (53%)
CCP 328..382 CDD:153056 18/107 (17%)
PHA02927 406..633 CDD:222943 66/281 (23%)
Blue background indicates that the domain is not in the aligned region.

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