DRSC/TRiP Functional Genomics Resources

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Protein Alignment hig and APOH

DIOPT Version :10

Sequence 1:NP_724773.1 Gene:hig / 35949 FlyBaseID:FBgn0010114 Length:958 Species:Drosophila melanogaster
Sequence 2:NP_000033.2 Gene:APOH / 350 HGNCID:616 Length:345 Species:Homo sapiens


Alignment Length:270 Identity:79/270 - (29%)
Similarity:105/270 - (38%) Gaps:45/270 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   707 VVVATSTCPQLTE----PLAPLKLRLEGNKLGQRAHYECPEGFRLDGAWNA-TCLASGNWSSPTP 766
            |.:|..|||:..:    .:.|||...|.   |:...|.|..|:...|.... .|..:|.|...|.
Human    16 VAIAGRTCPKPDDLPFSTVVPLKTFYEP---GEEITYSCKPGYVSRGGMRKFICPLTGLWPINTL 77

  Fly   767 TCHAIQCP---RLELDDPHLSLIEL-NTSAWGRAVFKCQWGFKLTGPAQLDCEPSGVWSGPVPRC 827
            .|....||   .||......:..|. ||.:     |.|..||.|.|.....|...|.||..:|.|
Human    78 KCTPRVCPFAGILENGAVRYTTFEYPNTIS-----FSCNTGFYLNGADSAKCTEEGKWSPELPVC 137

  Fly   828 KVIQCVMPVAPLNGRI-------GGTSLSQRRLTVGALVTFSCNDGHSLVGESSIICTENGQWSH 885
            ..|.|..|..|....:       |..||.:      ....|.|...|::.|..:|.||.:|.|:.
Human   138 APIICPPPSIPTFATLRVYKPSAGNNSLYR------DTAVFECLPQHAMFGNDTITCTTHGNWTK 196

  Fly   886 SPPFCKSQCPYPGDPPNGLIAPLKFNYDA------GDYLSVQCRPGFVQSYEGPPERPKCQPDGR 944
            .|...:.:||:|..|.||.:     ||.|      .|..:..|..|:  |.:| ||..:|...|.
Human   197 LPECREVKCPFPSRPDNGFV-----NYPAKPTLYYKDKATFGCHDGY--SLDG-PEEIECTKLGN 253

  Fly   945 WSGPMPKCKS 954
            ||. ||.||:
Human   254 WSA-MPSCKA 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
higNP_724773.1 Ig_3 612..696 CDD:464046
PHA02927 705..952 CDD:222943 77/266 (29%)
APOHNP_000033.2 PHA02927 41..260 CDD:222943 69/241 (29%)
Sushi_2 261..345 CDD:430371 1/2 (50%)
Sushi-like 263..345 79/270 (29%)
Blue background indicates that the domain is not in the aligned region.

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