DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hig and selp

DIOPT Version :9

Sequence 1:NP_724773.1 Gene:hig / 35949 FlyBaseID:FBgn0010114 Length:958 Species:Drosophila melanogaster
Sequence 2:XP_031756924.1 Gene:selp / 100485005 XenbaseID:XB-GENE-482807 Length:976 Species:Xenopus tropicalis


Alignment Length:556 Identity:139/556 - (25%)
Similarity:208/556 - (37%) Gaps:119/556 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   478 IRCVKGKWVG--PLCATNE--------------EDDNGNVKFQPLYKS-CHVNRIPSHLLLSYRN 525
            |:| |.:|.|  |.||..:              :|:.|  |||  |.| |..:......|....:
 Frog   220 IQC-KEEWSGLVPQCAVVDCPRLVVPELGSMECKDEYG--KFQ--YNSNCSFSCNEGFTLTGPNS 279

  Fly   526 ISVT------------------PIP-PNRGWRKTRLSKSTLLSNT----EINVGWDLPHGHSLQA 567
            :..|                  .|| |..|..|..........|:    ..|.|:.|...:|||.
 Frog   280 LQCTSSGSWSSDVPACKAVVCPSIPVPEHGSMKCEDDYEEFQYNSNCSFSCNEGFTLAGSNSLQC 344

  Fly   568 RCQELGIYKLLGESRVLCSNGLWAPRMPS-----CVPTTVLTNYS---EDSAPSIRIK------- 617
                             .|:|.|:..:|:     |.|.|...:.|   ||.....:..       
 Frog   345 -----------------TSSGSWSSNVPTCEAVVCPPITCPEHGSKECEDDFGEFQYNSNCSFSC 392

  Fly   618 ----IFNGSHSFE--PSGVMAVPPHSTVLMDC---MYPRVRGTPEWSWTSWYMQYSTGWSPAQEE 673
                |..||:|.:  .||..:....:...:||   :.|.: |:.|........:|::..|.:.:|
 Frog   393 SEGFILTGSNSLQCTSSGSWSSDVPACKAVDCPHLVVPEL-GSMECKDEHGEFKYNSNCSFSCKE 456

  Fly   674 KAVRYRLSIKNIENNDSGTFTCTSPRGLTNSIAVVVATSTCPQLTEP-LAPLKLR--LEGNKLGQ 735
                      .....:|.:..|||....::.:....|. .||.:..| ...:|..  .|..:...
 Frog   457 ----------GFTLTESNSLQCTSSGSWSSDVPACKAV-VCPSIPVPEHGSMKCEDDYEEFQYNS 510

  Fly   736 RAHYECPEGFRLDGAWNATCLASGNWSSPTPTCHAIQCPRLELDDPHLSLIELNTSAW---GRAV 797
            :..:.|.|||.|.|:.:..|.:||:|||..|||.|:.||.:.|.:......|.:...:   ....
 Frog   511 KCSFSCNEGFILAGSNSLQCTSSGSWSSDVPTCKAVVCPSIPLPEHGSKECENDYGEFQYNSNCS 575

  Fly   798 FKCQWGFKLTGPAQLDCEPSGVWSGPVPRCKVIQCVMPVAPLNGRIGGTSLSQR--RLTVGALVT 860
            |.|..||.||||..|.|..||.||..||.||.:.|...|.|   .:|.......  |....:..:
 Frog   576 FSCSEGFTLTGPNSLQCTSSGSWSSDVPACKAVDCPHLVVP---ELGSMECKDEYGRFQYNSNCS 637

  Fly   861 FSCNDGHSLVGESSIICTENGQWSHSPPFCKS-QCPYPGDPPNGLIAPL----KFNYDAGDYLSV 920
            |||.:|.:|.|.:|:.|..:|.|....|.|:: .||....|.:|.|...    ||.|::.  .||
 Frog   638 FSCKEGFTLTGSNSLQCISSGSWGSDVPTCEAVACPDIPVPEHGFIKCEDDYGKFQYNSN--CSV 700

  Fly   921 QCRPGFVQSYEGPPERPKCQPDGRWSGPMPKCKSYE 956
            .|..||   :....:..||...|.||..:|.|::.:
 Frog   701 SCNEGF---FLTGSDSLKCTSSGSWSSDVPACEAVQ 733

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
higNP_724773.1 PHA02927 705..952 CDD:222943 80/259 (31%)
CCP 714..768 CDD:153056 18/56 (32%)
CCP <795..828 CDD:153056 16/32 (50%)
CCP 832..891 CDD:153056 16/60 (27%)
Sushi 894..952 CDD:278512 19/61 (31%)
selpXP_031756924.1 CLECT_selectins_like 20..138 CDD:153062
EGF_CA 142..173 CDD:238011
PHA02927 178..419 CDD:222943 46/220 (21%)
PHA02927 439..667 CDD:222943 67/241 (28%)
CCP 672..730 CDD:153056 19/62 (31%)
PHA02927 <710..909 CDD:222943 7/24 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19325
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5897
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.100

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