DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment unpg and gsb

DIOPT Version :9

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster


Alignment Length:477 Identity:99/477 - (20%)
Similarity:158/477 - (33%) Gaps:188/477 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 VASSALGLTQFPLYNPWLHGYFAQNHERLTHLIAGGCYLPSSPAGHPAAQQPQAQAQPQPPPPHP 136
            :|.|||.:|      |:..||..|...|:..|  ||.::...|.                     
  Fly     1 MAVSALNMT------PYFGGYPFQGQGRVNQL--GGVFINGRPL--------------------- 36

  Fly   137 PTHALEKQLPPTLPHPLDTRFLPFNPAAAGVAPTDLSYRRL-------AELMN------------ 182
            |.| :.:|:              ...|||||.|..:| |:|       ::::|            
  Fly    37 PNH-IRRQI--------------VEMAAAGVRPCVIS-RQLRVSHGCVSKILNRFQETGSIRPGV 85

  Fly   183 ----QDYVHSLSVHARLQHMAAAGRMHEDQANPGM------AQLQEPTPPQAHSSPAKSGSHSPM 237
                :..|.:..:.:|::.:        .|:.||:      |:|.|.......::|         
  Fly    86 IGGSKPRVATPDIESRIEEL--------KQSQPGIFSWEIRAKLIEAGVCDKQNAP--------- 133

  Fly   238 EPALDVGMDEDFECSGDSCSDISLTMSPRNYNG---EMDKSRNGAYTNSDSEDCSDDEGAQSRHE 299
                             |.|.||..:...:.:|   .:|....|...:..|||.|:|:...|   
  Fly   134 -----------------SVSSISRLLRGSSGSGTSHSIDGILGGGAGSVGSEDESEDDAEPS--- 178

  Fly   300 GGGMGGKDSQGNGSSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVK 364
                         .....|.||.||.|:::|:..|||.|...:|..:..|.::|.|..|:|.:|:
  Fly   179 -------------VQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQ 230

  Fly   365 IWFQNRRAKWKR-------VKAGLTSHGLGRNGTTSGTKIVVPIPVHVNRFAVRSQHQQLEKMCL 422
            :||.||||:.::       .....||...|...|||                             
  Fly   231 VWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTS----------------------------- 266

  Fly   423 SGPKPDLRKKL----SAEAIGGFEK---FSGSTNASSPSGGPVGLGVGV-----------GVG-- 467
            :.|.|::...|    |..:.|.:|.   :.||..:.||:....|.....           |.|  
  Fly   267 AAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTGSE 331

  Fly   468 -----VGVGLGVSTPLSLARSI 484
                 .|||...:|..|.|.|:
  Fly   332 FMTSTYGVGSSNATYPSAAYSM 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeobox 324..375 CDD:278475 20/50 (40%)
gsbNP_523863.1 PAX 19..143 CDD:128645 31/196 (16%)
homeodomain 186..243 CDD:238039 23/56 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I2937
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.