DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment unpg and Rx

DIOPT Version :9

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster


Alignment Length:469 Identity:110/469 - (23%)
Similarity:159/469 - (33%) Gaps:181/469 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 PPSPP-EERDQEQEA---EQEQELSARAMVASSA-------LGLTQFPLYNPW-----LHGY--- 92
            ||:|| .::.|...|   ...|::..:|..|:.|       .|...|..:|.:     .|||   
  Fly   223 PPTPPGGQQPQVPNATPLHHGQQMGGQAGHATHAGHGHPTHHGHAPFGYHNAFGFGQGGHGYGHP 287

  Fly    93 --FAQNHERLTHLI---------AGGCYLPSSP---------AGHPAAQQPQAQAQPQP------ 131
              .|.|:....|.:         |.|...|.:|         ..|.||...|||.|...      
  Fly   288 EEAAGNYLNSMHQMVEANQLQTGANGANPPPAPLPPSSFGSHQQHLAALAAQAQEQQNQHSKYAK 352

  Fly   132 -------PPPHPPTHALEKQLPPTLPHPLDTRFLPFNPAAAGVAPTDLSYRRLAELMNQDYVHSL 189
                   |||.|..:.:|.|..|                   |||:.::|..             
  Fly   353 SSPTGAGPPPPPGAYFMESQTAP-------------------VAPSQINYDE------------- 385

  Fly   190 SVHARLQHMAAAGRMHEDQANPGMAQLQEPTPPQAHSSPAKSGSHSPM-----------EPAL-- 241
                  :.|::|..:.||..:....||...:||    :|:..|..:..           ||.|  
  Fly   386 ------RSMSSASDLEEDDDDAAKLQLDVTSPP----TPSPRGQLAAKRKSAGVFCDDNEPKLAN 440

  Fly   242 ------------------------------------------DVGMDEDFECSGDSCSDISLTMS 264
                                                      ..|...||..||:.         
  Fly   441 GQLPGGNYGIRPRSMEEVHHQQQSHHHQQQQQQQQQQQQLQQQQGFQHDFRNSGNG--------- 496

  Fly   265 PRNYNGEMDKSRNGAYTNSDSE-----DCSDDEG---AQSRHEGGGM-GGKDSQG-NGSSSNSKS 319
              |.||..:...:|...|:||:     .|:..|.   ..|..:|..: .|.|.:| :.:.:..|.
  Fly   497 --NPNGNSNSGDHGERLNADSDSLVNGSCASSEDLNQTNSSEQGEKITSGSDDEGQDDNCAKKKH 559

  Fly   320 RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKR------VK 378
            ||.||.||:.||.||||.|....|..:..|.::|..:.|.||:|::|||||||||:|      ::
  Fly   560 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLR 624

  Fly   379 AGLT-----SHGLG 387
            .|||     .|.||
  Fly   625 LGLTHFTQLPHRLG 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeobox 324..375 CDD:278475 25/50 (50%)
RxNP_726006.3 Homeobox 563..615 CDD:278475 26/51 (51%)
OAR 876..892 CDD:281777
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I2937
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.