DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment unpg and pdx1

DIOPT Version :9

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_571518.2 Gene:pdx1 / 30721 ZFINID:ZDB-GENE-990415-122 Length:246 Species:Danio rerio


Alignment Length:261 Identity:73/261 - (27%)
Similarity:104/261 - (39%) Gaps:77/261 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 RLQHMAAAGRMHED----QANPGMAQLQEPTP----PQAHSSPAKSGSHSPM----EPALDVGMD 246
            |.:|......:::|    |.:|.....|.|.|    .||||..|     ||:    :|.|     
Zfish     3 REEHYYPPNHLYKDSCAFQRHPNEDYSQNPPPCLYMRQAHSVYA-----SPLGAQDQPNL----- 57

  Fly   247 EDFECSGDSCSDI-SLTMSPRN----------YNGEMDKSRNGAYTNSDSEDCSDDEG------- 293
                      :|| |..||.|:          ...:......|.|  .||.|...|..       
Zfish    58 ----------TDITSYNMSSRDDLAGPHLHLPQTSQTSLQSLGGY--GDSLDLCGDRNRYHLPFP 110

  Fly   294 ---AQSRHEGGGMGGKDSQGNG--SSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIA 353
               :...|.....|    |..|  .....:::|.|||:|..||||||:||...||:|...|.::|
Zfish   111 WMKSTKSHTHAWKG----QWTGPYMVEAEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELA 171

  Fly   354 TSLKLSEVQVKIWFQNRRAKWKRVK-------------AGLTSHGLGRNGTTSGTKIVV--PIPV 403
            .:|.|:|..:||||||||.|||:.:             :.:||..| ::.:..||..:.  |.|:
Zfish   172 LTLSLTERHIKIWFQNRRMKWKKEEDKRRARGVDPEQDSSITSGDL-KDESCVGTATLAGPPSPL 235

  Fly   404 H 404
            |
Zfish   236 H 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeobox 324..375 CDD:278475 28/50 (56%)
pdx1NP_571518.2 Homeobox 140..193 CDD:278475 29/52 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

Return to query results.
Submit another query.