DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and msx1a

DIOPT Version :9

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_571348.1 Gene:msx1a / 30527 ZFINID:ZDB-GENE-980526-312 Length:233 Species:Danio rerio


Alignment Length:157 Identity:52/157 - (33%)
Similarity:72/157 - (45%) Gaps:51/157 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   319 SRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVKAGLTS 383
            :|:.||.|::.|||.|||:|..|:|||:.||::.::||.|:|.||||||||||||.||:      
Zfish   111 NRKPRTPFSTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL------ 169

  Fly   384 HGLGRNGTTSGTKIVVPIPVHVNRFAVRSQHQQLEKMCLSGPKPDL----------RKKLSAEAI 438
                                         |..:|||:.::. ||.|          ...:.|.:.
Zfish   170 -----------------------------QEAELEKLKMAA-KPLLPPAFGISFPAGAHIPAYSA 204

  Fly   439 GGFEKFSGSTNASSPSGGPVGLGVGVG 465
            |.......|.|.|     ||||...:|
Zfish   205 GSHPFHRHSANVS-----PVGLYTHMG 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeobox 324..375 CDD:278475 31/50 (62%)
msx1aNP_571348.1 Homeobox 114..167 CDD:278475 32/52 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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