DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and Pdx1

DIOPT Version :10

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_074043.4 Gene:Pdx1 / 29535 RGDID:62387 Length:283 Species:Rattus norvegicus


Alignment Length:336 Identity:85/336 - (25%)
Similarity:123/336 - (36%) Gaps:126/336 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 YFAQNHERLTHLIAGGCYLPSSPAGHPAAQQPQAQAQP--------QPPPPHPPTHA-----LEK 143
            |:|     .|.|....|.....|.       |:..|.|        |||||.||..|     ||:
  Rat     7 YYA-----ATQLYKDPCAFQRGPV-------PEFSANPPACLYMGRQPPPPPPPQFAGSLGTLEQ 59

  Fly   144 QLPPTLPHPLDTRFLPFNPAAAGVAPTDLSYRRLAELMNQDYVHSLSVHARLQHMAAAGRMHEDQ 208
            ..||.: .|.:...|..:||.|                   ::|        .|:          
  Rat    60 GSPPDI-SPYEVPPLADDPAGA-------------------HLH--------HHL---------- 86

  Fly   209 ANPGMAQLQEPTPPQAHSSPAKSGSHSPMEPALDVGMDEDFECSGDSCSDISLTMSPRNYNGEMD 273
              |....|..|.|     .|..:|:.:.       |::|.        |.:.|...      .|.
  Rat    87 --PAQLGLAHPPP-----GPFPNGTETG-------GLEEP--------SRVHLPFP------WMK 123

  Fly   274 KSRNGAYTNSDSEDCSDDEGAQSRHEGGGMGGKDSQGNGSSSNSKSRRRRTAFTSEQLLELEREF 338
            .::..|:              :|:..||....:..:         ::|.|||:|..||||||:||
  Rat   124 STKAHAW--------------KSQWAGGAYAAEPEE---------NKRTRTAYTRAQLLELEKEF 165

  Fly   339 HAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVK-----AGLTSHGLGRN------GTT 392
            ...||:|...|.::|..|.|:|..:||||||||.|||:.:     :|.||.|.|..      ..|
  Rat   166 LFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKRSSGTTSGGGGGEEPEQDCAVT 230

  Fly   393 SGTKIV-VPIP 402
            ||.::: :|.|
  Rat   231 SGEELLALPPP 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 29/51 (57%)
Pdx1NP_074043.4 Transactivation domain 13..73 19/67 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 36..81 17/64 (27%)
Antp-type hexapeptide 118..123 0/10 (0%)
Homeodomain 147..203 CDD:459649 31/55 (56%)
Nuclear localization signal. /evidence=ECO:0000250 197..203 4/5 (80%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..283 12/41 (29%)

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