DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and Hoxd13

DIOPT Version :9

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_032301.2 Gene:Hoxd13 / 15433 MGIID:96205 Length:339 Species:Mus musculus


Alignment Length:325 Identity:72/325 - (22%)
Similarity:109/325 - (33%) Gaps:115/325 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 AAGVAPTDLSYRRLAELMNQDYV--------HSLSVHARLQHMAAAGRMHEDQANPGMAQ----- 215
            |||.||...|....|....:.::        ||....|.....|||.......|.||.::     
Mouse    18 AAGAAPASSSSSVAAPGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASSFAYPGTSERTGSS 82

  Fly   216 ---------LQEPTPPQAHSSPAKSGSHS----PMEPALDVG----------------------- 244
                     ...|..|.|...||.:.:.:    |..|||..|                       
Mouse    83 SSSSSSAVIATRPEAPVAKECPAPAAAATAAAPPGAPALGYGYHFGNGYYSCRMSHGVGLQQNAL 147

  Fly   245 ------------MDEDFECSGDSCSDISLTMSP----------------RNYNGEMD-------- 273
                        :::..:.||.:.|.:.....|                ::..|.:|        
Mouse   148 KSSPHASLGGFPVEKYMDVSGLASSSVPTNEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSG 212

  Fly   274 KSRNGAYTNSDSEDCSDDEGAQSRHEGGGMG-----GKDS-QGNGSSSNS--------------- 317
            :.|:.||.:.        ||.||.....|..     .||. ||:....:|               
Mouse   213 EPRHEAYISM--------EGYQSWTLANGWNSQVYCAKDQPQGSHFWKSSFPGDVALNQPDMCVY 269

  Fly   318 -KSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVKAGL 381
             :.|::|..:|..||.|||.|:...|:::..:|.:|:.:..|||.||.|||||||.|.|::.:.|
Mouse   270 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKL 334

  Fly   382  381
            Mouse   335  334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeobox 324..375 CDD:278475 23/50 (46%)
Hoxd13NP_032301.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33 6/14 (43%)
HoxA13_N <121..168 CDD:403486 2/46 (4%)
Homeobox 275..329 CDD:395001 24/53 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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