DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and Hoxd1

DIOPT Version :9

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_034597.2 Gene:Hoxd1 / 15429 MGIID:96201 Length:328 Species:Mus musculus


Alignment Length:343 Identity:90/343 - (26%)
Similarity:120/343 - (34%) Gaps:89/343 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 GGCYLPSSPA-----GHPAAQQPQ----------------AQAQPQPPPPHPPTHALEKQLPPTL 149
            ||..|..:|.     ..|.|.||.                |.|:|.|.||..|.     |.|  :
Mouse    20 GGDVLGFAPKFCRADARPVALQPAFPLGSGDGAFVSCLPLATARPTPSPPAGPA-----QSP--V 77

  Fly   150 PHPLDTRFLPFNPAAA---GVAPTDLS-YRRLAELMNQDYVHSLS---------VHARLQHMAAA 201
            |.|...|:.|.....|   |.||...: |..|......|:..:|.         ||.....:.:.
Mouse    78 PQPAAPRYAPCTLEGAYERGAAPASAAEYGFLGSGPAFDFPGALGRAADEGGAHVHYATSAVFSG 142

  Fly   202 GRMHEDQANPGMAQLQEPTP-PQAHSSPAKS--GSHSPMEPALDVGMDEDFECSGDSCSDISLTM 263
            |...........|...||.| |.....||..  |....:.||...       |...:....||..
Mouse   143 GGSFLLSGQVDFAAFGEPGPFPACLKEPADGHPGPFQTVSPAPGA-------CPKPASPTSSLPA 200

  Fly   264 SPRNYNGEMDKSRNGAYTNSDSEDCSDDEGAQSRHEGGGMGGKDSQGNGSSSNSKSRRRRTAFTS 328
            :...:.. |...||..                          |.|:.:...:.|.....||.|::
Mouse   201 AHSTFEW-MKVKRNAP--------------------------KKSKLSEYGATSPPSAIRTNFST 238

  Fly   329 EQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKR--------VKAGLTSHG 385
            :||.|||:|||..|||:...|.:||..|:|::.||||||||||.|.|:        ..|.:.|..
Mouse   239 KQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNRRMKQKKREREGLLATAASVASIK 303

  Fly   386 LGRNGTT---SGTKIVVP 400
            |.|:.|:   ||..:..|
Mouse   304 LPRSETSPIKSGRNLGSP 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeobox 324..375 CDD:278475 29/50 (58%)
Hoxd1NP_034597.2 PRK04233 59..>105 CDD:305134 17/52 (33%)
Antp-type hexapeptide 204..209 0/5 (0%)
Homeobox 233..285 CDD:278475 30/51 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 304..328 6/18 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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