DRSC/TRiP Functional Genomics Resources

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Protein Alignment unpg and Hoxa3

DIOPT Version :10

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001300749.1 Gene:Hoxa3 / 103690130 RGDID:1561431 Length:444 Species:Rattus norvegicus


Alignment Length:433 Identity:104/433 - (24%)
Similarity:146/433 - (33%) Gaps:171/433 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 LYNPWLHGYFAQNHERLTHLIAGGCYL-----PSSP--AGHPAAQQPQAQA-----QPQPPPPHP 136
            |.:|...|...::||     ::..|..     ||.|  .|.|....|..||     ||..|||.|
  Rat    53 LQSPASAGAHPKSHE-----LSEACLRTLSGPPSQPPGLGDPPLPPPPPQAAPPAPQPPQPPPQP 112

  Fly   137 PTHALEKQLPPTLPHPLDTRFLPFNPAAAGVAPTDLSYRRLAELMNQDYVHSLSVHARLQHMAAA 201
            |........||:...|         |.:|...||..|..: :.|:|...|               
  Rat   113 PAPTPAAPPPPSSVSP---------PQSANSNPTPASTAK-SPLLNSPTV--------------- 152

  Fly   202 GRMHEDQANPGMAQLQEPTPPQAHSSPAKSGSHSPMEPALDVGMDEDFECSGDSCSDISLTMSPR 266
            |:    |..|.|.:.::.|..:.      |||                 .||:||:         
  Rat   153 GK----QIFPWMKESRQNTKQKT------SGS-----------------SSGESCA--------- 181

  Fly   267 NYNGEMDKSRNGAYTNSDSEDCSDDEGAQSRHEGGGMGGKDSQGNGSSSNSKSRRRRTAFTSEQL 331
                                                 |.|...|..|     |:|.|||:||.||
  Rat   182 -------------------------------------GDKSPPGQAS-----SKRARTAYTSAQL 204

  Fly   332 LELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVKAG---LTSHGLGRNGTTS 393
            :|||:|||..:||....|.::|..|.|:|.|:||||||||.|:|:.:.|   |||.| |::.:.|
  Rat   205 VELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSG-GQSPSRS 268

  Fly   394 GTKIVVPIPVHVNRFAVRSQHQQLEKM-------------------------------CLSGPKP 427
                  |:|.....: :.|.|..:..:                               |...|.|
  Rat   269 ------PVPPGAGGY-LNSMHSLVNSVPYEPQSPPPFSKPPQGAYGLPPASYPAPLPSCAPPPPP 326

  Fly   428 DLRKKLSAEAIGGFEKF---------SGSTNASSPSGGPVGLG 461
            ..|...:....||..::         :||.......|.||.:|
  Rat   327 QKRYTAAGSGAGGTPEYDPHAHGLQGNGSYGTPHLQGSPVFVG 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 29/51 (57%)
Hoxa3NP_001300749.1 COG5576 <182..309 CDD:227863 48/139 (35%)
Homeodomain 193..249 CDD:459649 31/55 (56%)
DUF4074 378..442 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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