DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment unpg and hoxc4

DIOPT Version :9

Sequence 1:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster
Sequence 2:XP_002936684.1 Gene:hoxc4 / 100486039 XenbaseID:XB-GENE-967141 Length:297 Species:Xenopus tropicalis


Alignment Length:335 Identity:85/335 - (25%)
Similarity:129/335 - (38%) Gaps:113/335 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 EERDQEQEAEQEQELSARAMVASSALGLTQF--PLYNPWLHGYFAQNHERLTHLIAGGCYLPS-S 113
            |:|..|:.....|:|    |:.||.|..:.:  |.:.|...  ::||:           |:|. |
 Frog    19 EKRQSEKNYFPLQKL----MIMSSYLMDSNYIDPKFPPCEE--YSQNN-----------YIPEHS 66

  Fly   114 PAGHPAAQQPQAQAQPQPPPPHPPTHALEKQLPPTLPHPLDTRF------LPFNPAAAGVAPTDL 172
            |..:..::.|..|..             :...||...:| :.:|      .|.|||         
 Frog    67 PEYYSRSRDPAFQHH-------------QDLYPPRTAYP-ERQFSCASIQAPGNPA--------- 108

  Fly   173 SYRRLAELMNQDYVHSLSVHARLQHMAAAGRMHEDQANPGMAQL-QEPTPPQAHSSPAKSGSHSP 236
                              .|.||.     |:...:....|.:|| :.|||..|.:|.:.|.|.:|
 Frog   109 ------------------THPRLH-----GQPQSNHNLVGKSQLCEHPTPSLASNSSSSSPSPAP 150

  Fly   237 MEPALDVGMDEDFECSGDSCSDISLTMSPRNYNGEMDKSRNGAYTNSDSEDCSDDEGAQSRHEGG 301
                             .:|:....:..|               ||:.|:........:..|.  
 Frog   151 -----------------TACTQAPTSEHP---------------TNTASKQPIVYPWMKKIHV-- 181

  Fly   302 GMGGKDSQGNGSSSNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIW 366
                  |..|.:.:..:.:|.|||:|.:|:||||:|||..:||:...|.:||.||.|||.|:|||
 Frog   182 ------SSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIW 240

  Fly   367 FQNRRAKWKR 376
            |||||.|||:
 Frog   241 FQNRRMKWKK 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unpgNP_477146.1 Homeobox 324..375 CDD:278475 31/50 (62%)
hoxc4XP_002936684.1 Homeobox 196..250 CDD:365835 33/53 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.