DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab32 and rab24

DIOPT Version :9

Sequence 1:NP_525109.1 Gene:Rab32 / 35940 FlyBaseID:FBgn0002567 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001025141.1 Gene:rab24 / 574423 ZFINID:ZDB-GENE-050706-110 Length:202 Species:Danio rerio


Alignment Length:164 Identity:51/164 - (31%)
Similarity:85/164 - (51%) Gaps:15/164 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   485 KILVIGELGTGKTSFIKRYVH-QFFSQNYRATIGVDFALKVLQWDANTIVRLQLWDIAGQERFGN 548
            |::::|:...||||.::|||| :|....|:.|||..|..|.|. ....::.|.:||.||.||:..
Zfish     9 KVVMLGKESVGKTSLVERYVHRRFLVGPYQNTIGAAFVAKALN-VGEKVITLGIWDTAGSERYEA 72

  Fly   549 MTRVYYKEAVGAFIVFDVTRSGTFDCVSKWKEDLDS-----KVQLPDGSPIPCILLANKCDQEKQ 608
            |:|:||:.|..|.:.:|:|.|.:|.....|.::|.:     |:.|       |...::..:.::.
Zfish    73 MSRIYYRGARAAIVCYDLTDSSSFGRARFWVKELQNCEEHCKIYL-------CGTKSDLIEADRS 130

  Fly   609 GIITQPEKMDEYVRENGFAGWFETSAKENINIDE 642
            ........:.::..|.| |..||||:|...|:||
Zfish   131 TRQVDYHDVQDFADEIG-AQHFETSSKTGKNVDE 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab32NP_525109.1 Rab32_Rab38 484..686 CDD:206692 51/164 (31%)
RAB 484..652 CDD:197555 51/164 (31%)
rab24NP_001025141.1 Rab24 8..200 CDD:133318 51/164 (31%)
Ras 9..171 CDD:278499 51/164 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1340129at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.