DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab32 and Rab20

DIOPT Version :9

Sequence 1:NP_525109.1 Gene:Rab32 / 35940 FlyBaseID:FBgn0002567 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_035357.1 Gene:Rab20 / 19332 MGIID:102789 Length:233 Species:Mus musculus


Alignment Length:213 Identity:55/213 - (25%)
Similarity:86/213 - (40%) Gaps:42/213 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   485 KILVIGELGTGKTSFIKRYVHQFFSQNYRATIGVDFALKVLQWDANTIVRLQLWDIAGQERFGNM 549
            ||:::|::..||||.::||:.:.|.... :|:|..|.||  ||.:   ..:.:||.||:|:|..:
Mouse     7 KIVLLGDMNVGKTSLLQRYMERRFPDTV-STVGGAFYLK--QWRS---FNISIWDTAGREQFHGL 65

  Fly   550 TRVYYKEAVGAFIVFDV----------------TRSGTFDC---VSKWKEDLDSKVQLPDGSPI- 594
            ..:|.:.|....:.:||                |.:...||   :...|.||.|:.....|... 
Mouse    66 GSLYCRGAAAIILTYDVNHPQSLFELEDRFLGLTETANNDCLFAIVGNKVDLTSERDTEGGEKEG 130

  Fly   595 PCILLANKCDQEKQGIITQPE-------------KMDEYVRENGFAGWFETSAKENINID---EA 643
            |.......|...|.....|||             .:||..........||||||...|:|   |.
Mouse   131 PASGKVGSCVSTKVPKQVQPEDAVALYKKILKYKMLDEREMPAAEQMCFETSAKTGYNVDLLFET 195

  Fly   644 ARALVNKILINDKLISAD 661
            ...||..:::..:...:|
Mouse   196 LFDLVVPMIMRQRAEESD 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab32NP_525109.1 Rab32_Rab38 484..686 CDD:206692 55/213 (26%)
RAB 484..652 CDD:197555 54/202 (27%)
Rab20NP_035357.1 Rab20 7..232 CDD:133326 55/213 (26%)
Ras 7..196 CDD:278499 52/194 (27%)
Effector region. /evidence=ECO:0000250 33..41 2/8 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..138 3/18 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1340129at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.