DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rme-8 and CG8531

DIOPT Version :9

Sequence 1:NP_610467.1 Gene:Rme-8 / 35939 FlyBaseID:FBgn0015477 Length:2408 Species:Drosophila melanogaster
Sequence 2:NP_610945.1 Gene:CG8531 / 36584 FlyBaseID:FBgn0033918 Length:545 Species:Drosophila melanogaster


Alignment Length:579 Identity:114/579 - (19%)
Similarity:197/579 - (34%) Gaps:164/579 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1322 IRKSYYKLAQMYHPDK--NPNGRE----IFEKVNQAYEFLC---SRNVWSSGGPDPNNIVLILRT 1377
            |..:|.|.::|:||||  :|:.::    :|.:..:|||.|.   .|.::.|.|...      |||
  Fly    31 INTAYRKQSRMFHPDKHLDPDSKKMAEIMFNRTKRAYEVLSDPQQRAIYDSVGEKG------LRT 89

  Fly  1378 Q--SILFE-RYPDVLRPYKYAGYPQLIKTIRLETRDD------------ELFSKEAQLLTAASEL 1427
            :  .||.. :.||.:|. :|....|.....||:.|.:            |:|:.           
  Fly    90 EGWEILHRTKTPDEIRE-EYERLAQAAAERRLQQRTNPRGNITINVNATEIFAP----------- 142

  Fly  1428 CYHTVHCSALNAEELRREEGIEALLEAYTRCVSILGVDSKPDSLHYQVISNVTRCFEVACN---- 1488
             |.......:....:...:.|||.:   ||...|:...:.     |....|.:..|.:|..    
  Fly   143 -YDDSEMPHVEIGSMSIAQSIEAPI---TRKDMIIMSGNL-----YSSNGNGSGGFVIAGRRLLN 198

  Fly  1489 ---FEKC-----------------KQKII-------------QLPQLLSDVCRVVYFKHTLSVSL 1520
               .|.|                 .||:.             .:|.|.|.:. |...|||:  ..
  Fly   199 KGWIELCAGAGNGFLLGLKGGRTLSQKLTLNGGTNLNFRDQGVIPALFSTLA-VQLDKHTM--GS 260

  Fly  1521 VTSLAANNYDLQCQLSRNGVLWSL---LLFIFEYDYTLDESGVDVSDKSNQQQLANNLAKMAVLG 1582
            :|..|.:...:..|:..:...:||   |:....:.|    .|:..:.|..:.:|...||  |.:|
  Fly   261 LTLNAGSQSSMSTQIDHSKETYSLSSSLVIGTPHVY----FGLSYTRKMMENELKLKLA--AKVG 319

  Fly  1583 CIALAG-YSMELR-QKPVTGSETNSPAAKAPPVIKPKPSVSAASSSTYTQNAHNPLQSKQLAITS 1645
            .....| |.:|.: .|..:.:.|.|....:..::|.|   ...|:.:|....|...:....|:..
  Fly   320 TFGFMGEYGVEKKVSKYSSVTATVSIGVPSGVILKFK---ILRSNQSYVFPIHLSDEIVPAAVFY 381

  Fly  1646 G-----------KEKESDTSSGSSDTASSTPTESEQQQQLTKTRTSA------IQQKY--IVTGE 1691
            .           |....|.............|:.:.:|:|:..|..|      :|..|  |:|.|
  Fly   382 ASVTPVIAWFFIKRTVMDPMEAERKNIEVERTKRQNEQRLSAKRHEASAAVHLMQATYNRIMTEE 446

  Fly  1692 -AKNSLIKQVLDRLLTRYI-------SNQLATVRDSDVLKLLTANTRNPYLIWDNGTRAQLKDFL 1748
             |:|.||       :||.:       ..|....:..||...:....:|..|...:.:::.|..|.
  Fly   447 LARNGLI-------VTRAVYGCTLAGGRQFKPEQSLDVTVAIQCMVKNGTLQLHDSSKSDLPGFY 504

  Fly  1749 E----QQRTASAKETHEDIAQVSELVSSFEFDAHKDELQIGGIFIRIYNDMPTHPIAQP 1803
            :    :.:....:.|::         :.||....||            |:....|:.||
  Fly   505 DPGIGEDKILRIEYTYQ---------NQFEVIHIKD------------NEALRLPLRQP 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rme-8NP_610467.1 DUF4339 972..1020 CDD:290937
DnaJ 1304..1356 CDD:278647 13/39 (33%)
HEAT repeat 2174..2200 CDD:293787
HEAT repeat 2212..2243 CDD:293787
HEAT repeat 2253..2282 CDD:293787
HEAT repeat 2291..2327 CDD:293787
CG8531NP_610945.1 DnaJ 15..>91 CDD:223560 20/65 (31%)
DnaJ 15..80 CDD:278647 15/48 (31%)
DUF3395 409..538 CDD:288708 29/156 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464397
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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