Protein Alignment Rad51D and DMC1

DIOPT Version :9

• Sequence 1: NP_610466.2
• Gene: Rad51D / 35937
• FlyBaseID: FBgn0033389
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_011106.1
• Gene: DMC1 / 856926
• SGDID: S000000981
• Length: 334
• Species: Saccharomyces cerevisiae
• Alignment Length: 351
• Identity: 75/351 - (21%)
• Similarity: 138/351 - (39%)
• Gaps: 73/351 - (20%)

  Fly    16 LSEYQLNL-----LRKNNICSLIDFYDADEKKLHELWAINIQSVRELKK------ELSLLPKG-S 68
            |..|.:|.     |:...|.::........:.|.::..::...|.::|:      ::..:|.. .
Yeast    22 LQNYGINASDLQKLKSGGIYTVNTVLSTTRRHLCKIKGLSEVKVEKIKEAAGKIIQVGFIPATVQ 86

  Fly    69 VDEGTPDFNYDTGIEELDKLLDSVEQPFKPGRVWELCGQPGVGKTQLLYTLALNFVWKHSQA--- 130
            :|.....::..||.::||.:|........   :.|:.|:...||||:.:||.:.........
Yeast    87 LDIRQRVYSLSTGSKQLDSILGGGIMTMS---ITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGE 148

  Fly   131 --VLFIDTKREFSCKRIQDMLRAREVDEEASERAMKGIRVVQAATGADINDLLKSFDHQLTAETH 193
              |.:|||:..|..:||:.:....|:|.|:   .:..:...:|.......:|::....:|::..:
Yeast   149 GKVAYIDTEGTFRPERIKQIAEGYELDPES---CLANVSYARALNSEHQMELVEQLGEELSSGDY 210

  Fly   194 ASMQTKLVLIDSLAACFAF-YRGRRMRDVRKSVLTELACKIRKLALRGVAFVIGNVSFFENNKDS 257
                 :|:::||:.|.|.. |.||.....|:..|.:...|:.:||..      .||:.|..|:..
Yeast   211 -----RLIVVDSIMANFRVDYCGRGELSERQQKLNQHLFKLNRLAEE------FNVAVFLTNQVQ 264

  Fly   258 CGDDGEQ----NGDDEE-----------VTRQQLEPMLGSYWSSVATLRLSVELPEEEDFTLQDD 307
             .|.|..    :.|..:           .||..|....|.  ..||.|:.|.::||:|
Yeast   265 -SDPGASALFASADGRKPIGGHVLAHASATRILLRKGRGD--ERVAKLQDSPDMPEKE------- 319

  Fly   308 GLRFIYVISNTYGPDGEHCLLRITDA 333
               .:|||    |..|      |||:
Yeast   320 ---CVYVI----GEKG------ITDS 332

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad51D	NP_610466.2	P-loop_NTPase	80..336	CDD:304359	65/275 (24%)
		radB	80..335	CDD:236482	65/275 (24%)
DMC1	NP_011106.1	recomb_DMC1	19..332	CDD:131292	74/349 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0468
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810