Protein Alignment Rad51D and xrcc3

DIOPT Version :10

• Sequence 1: NP_610466.2
• Gene: Rad51D / 35937
• FlyBaseID: FBgn0033389
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_001013559.1
• Gene: xrcc3 / 541414
• ZFINID: ZDB-GENE-050320-116
• Length: 352
• Species: Danio rerio
• Alignment Length: 316
• Identity: 70/316 - (22%)
• Similarity: 123/316 - (38%)
• Gaps: 49/316 - (15%)

  Fly     1 MDLRPMILQTC-TGRLLSEYQLNLLRKNNICSLIDFYDADEKKLHELWAINIQSVRELKKELSL- 63
            ::|.|.|:... .|...|..::..:...::..|.....||.::||:..|   .|||:.|...:|
Zfish     6 LELNPRIIAAVKKGNFRSAKEVLCVSGPDLQRLTRLSKADVQRLHQAVA---ASVRKSKPVTALQ 67

  Fly    64 LPKGSVDEGTPDFNYDTGIEELDKLLDSVEQPFKPGRVWELCGQPGVGKTQ--LLYTLALNFVWK 126
            |.:|......|..........||.|:.. ..|.:  .:.||.|:...||||  |...|::.:..:
Zfish    68 LIQGECPVLEPGHRLSFACPVLDGLMRG-GLPLR--GITELAGESAAGKTQFCLQLCLSVQYPQE 129

  Fly   127 H---SQAVLFIDTKREFSCKRIQDML----RAREVDEEASERAMKGIRVVQAATGADINDLLKSF 184
            |   :...::|.|:..|..||::.::    |.|.....|...:::....:.....||:..|....
Zfish   130 HGGLNSGAVYICTEDSFPIKRLRQLITQQPRLRPDLPPALIHSLRFSDNIYIEHAADLEALQVCV 194

  Fly   185 DHQLTAETHASMQTKLVLIDSLAACF--------AFYRGRRMRDVRKSVLTEL----ACKIRKLA 237
            ..::.......: .:|:::||:||.|        |..|.|.:. ...|.|..|    |..:  |.
Zfish   195 SQRVPVLLKRGL-VRLLVVDSVAALFRSEFQADEAVQRSRHLL-AFSSTLHRLSHTYAAPV--LC 255

  Fly   238 LRGVAFVIGNVSFFENNKDSCGDDGEQNGD-DEEVTRQQLEPMLGSYWSSVATLRL 292
            :..|..|:               ||...|. |..:...::.|.||..|::...:||
Zfish   256 VNQVTDVV---------------DGPNPGRCDYGLVGSKVLPALGIAWANQVMVRL 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad51D	NP_610466.2	P-loop containing Nucleoside Triphosphate Hydrolases	94..300	CDD:476819	48/221 (22%)
xrcc3	NP_001013559.1	XRCC3	89..327	CDD:410899	51/230 (22%)