Protein Alignment Rad51D and spn-A

DIOPT Version :10

• Sequence 1: NP_610466.2
• Gene: Rad51D / 35937
• FlyBaseID: FBgn0033389
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_524583.1
• Gene: spn-A / 43577
• FlyBaseID: FBgn0003479
• Length: 336
• Species: Drosophila melanogaster
• Alignment Length: 345
• Identity: 83/345 - (24%)
• Similarity: 142/345 - (41%)
• Gaps: 73/345 - (21%)

  Fly     5 PMILQTCTGRLLSEYQLNLLRKNNICSLIDFYDADEKKLHELWAINIQSVRELKKELS-LLPKGS 68
            |:.:....|..::...:.||::.::.::....:|.:|:|..:..:....|.::..|.: |:|.|.
  Fly    19 PLSVTKLIGGSITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVPLGF 83

  Fly    69 VDEGT------PDFNYDTGIEELDKLLDSVEQPFKPGRVWELCGQPGVGKTQLLYTLALNFVWKH 127
            :...|      ......||.:||||||..   ..:.|.:.|:.|:...|||||.:|||:......
  Fly    84 LSARTFYQMRADVVQLSTGSKELDKLLGG---GIETGSITEIFGEFRCGKTQLCHTLAVTCQLPI 145

  Fly   128 SQ-----AVLFIDTKREFSCKRIQDM-----LRAREV-DEEASERAMKG---IRVVQAATGADIN 178
            ||     ..::|||:..|..:|:..:     |...|| |..|..||...   .:::|.|.|.
  Fly   146 SQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGM--- 207

  Fly   179 DLLKSFDHQLTAETHASMQTKLVLIDSLAACF-AFYRGRRMRDVRKSVLTELACKIRKLALR-GV 241
             |.:|             :..|:::||..|.: :.|.||.....|::.|......:::||.. ||
  Fly   208 -LFES-------------RYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGV 258

  Fly   242 AFVIGNVSFFENNKDSCGDDGEQNGDDEEVTRQQLEPMLGSYWSSVATLRLSVE----------- 295
            |.||       .|:.:...||.....|.:      :|:.|...:..:|.||.:.
  Fly   259 AVVI-------TNQVTASLDGAPGMFDAK------KPIGGHIMAHSSTTRLYLRKGKGETRICKI 310

  Fly   296 -----LPEEED-FTLQDDGL 309
                 |||.|. |.:..||:
  Fly   311 YDSPCLPESEAMFAILPDGI 330

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad51D	NP_610466.2	P-loop containing Nucleoside Triphosphate Hydrolases	94..300	CDD:476819	58/237 (24%)
spn-A	NP_524583.1	recomb_RAD51	22..335	CDD:274048	82/342 (24%)