Protein Alignment Rad51D and Dmc1

DIOPT Version :9

• Sequence 1: NP_610466.2
• Gene: Rad51D / 35937
• FlyBaseID: FBgn0033389
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_001124039.1
• Gene: Dmc1 / 362960
• RGDID: 1307611
• Length: 340
• Species: Rattus norvegicus
• Alignment Length: 334
• Identity: 76/334 - (22%)
• Similarity: 142/334 - (42%)
• Gaps: 63/334 - (18%)

  Fly    15 LLSEYQLNL-----LRKNNICSLIDFYDADEKKLHELWAINIQSVRELKKELS-LLPKGSV---- 69
            ||.::.:|:     |:...||::........:.|..:..::...|.::|:..: |:..|.:
  Rat    26 LLQKHGINMADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVEKIKEAANKLIEPGFLTAFQ 90

  Fly    70 --DEGTPDFNYDTGIEELDKLL-DSVEQPFKPGRVWELCGQPGVGKTQLLYTLALNFVWKHSQA- 130
              ::....|:..||.:|.|||| ..:|..    .:.|..|:...|||||.:||.:......:..
  Rat    91 YSEKRKMVFHITTGSQEFDKLLGGGIESM----AITEAFGEFRTGKTQLSHTLCVTAQLPGADGY 151

  Fly   131 ----VLFIDTKREFSCKRIQDMLRAREVDEEASERAMKGIRVVQAATGADINDLLKSFDHQLTAE 191
                ::||||:..|...|::|:.....||.:|   .:..:...:|.|.....:||   |: :.|:
  Rat   152 SGGKIIFIDTENTFRPDRLRDIADRFNVDHDA---VLDNVLYARAYTSEHQMELL---DY-VAAK 209

  Fly   192 THASMQT-KLVLIDSLAACFAF-YRGRRMRDVRKSVLTELACKIRKLALRGVAFVIGNVSFFENN 254
            .|..... ||:::||:.|.|.. :.||.....|:..|.::..:::|::..      .||:.|..|
  Rat   210 FHEEAGIFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEE------YNVAVFVTN 268

  Fly   255 KDSCGDDGEQNGDDEEVTRQ--QLEPMLGSYWSSVATLRLSV----------------ELPEEE- 300
            : ...|.|      ..:|.|  ..:|:.|...:..:|.|:|:                |:||.|
  Rat   269 Q-MTADPG------ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEA 326

  Fly   301 DFTLQDDGL 309
            .|.:...|:
  Rat   327 TFAITTGGI 335

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad51D	NP_610466.2	P-loop_NTPase	80..336	CDD:304359	64/257 (25%)
		radB	80..335	CDD:236482	64/257 (25%)
Dmc1	NP_001124039.1	recomb_DMC1	24..338	CDD:131292	76/334 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0468
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810