DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rad51D and Rad51d

DIOPT Version :9

Sequence 1:NP_610466.2 Gene:Rad51D / 35937 FlyBaseID:FBgn0033389 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_001100499.1 Gene:Rad51d / 303375 RGDID:1306944 Length:329 Species:Rattus norvegicus


Alignment Length:336 Identity:94/336 - (27%)
Similarity:157/336 - (46%) Gaps:39/336 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 CTGRLLSEYQLNLLRKNNICSLIDFYDADEKKLHELWAINIQSV----RELKKELSLLPKGSVD- 70
            |.|  |:|..:.|||...|.::.|...||.:::.:...::.:::    |.|..:.|..|....| 
  Rat     9 CPG--LTEEIVQLLRGRKIKTVADLAAADLEEVAQKCGLSYKALVALRRVLLAQFSAFPLNGADL 71

  Fly    71 ---EGTPDFNYDTGIEELDKLLDSVEQPFKPGRVWELCGQPGVGKTQLLYTLALNFVWKHSQAVL 132
               ..|......|||..||||||:   ....|.:.|:.|.||.||||:...:|.|......|.||
  Rat    72 YEELKTSTAILSTGIGSLDKLLDA---GLYTGELTEIVGGPGSGKTQVCLCVAANVAHSLQQNVL 133

  Fly   133 FIDTKREFSCKRIQDMLRAREVDEEASERAMKGIRVVQAATGADINDLLKSFDHQLTAETHASMQ 197
            ::|:....:..|:..:|:||..|||....|::.|:||.:.....:.|:|:.....:..:..||..
  Rat   134 YVDSNGGMTASRLLQLLQARTQDEEKQASALQRIQVVHSFDIFQMLDMLQDLRGTMAQQATASSG 198

  Fly   198 T-KLVLIDSLAACFAFYRGRRMRDVRKSVLTELACKIRKLAL-RGVAFVIGNVSFFENNKDSCGD 260
            | |:|::||:.|..|...|.:.|: ..:::.:||.:::.||. .|||.|:.|  ....::||   
  Rat   199 TVKVVIVDSVTAVVAPLLGGQQRE-GLALMMQLARELKILARDLGVAVVVTN--HLTRDRDS--- 257

  Fly   261 DGEQNGDDEEVTRQQLEPMLGSYWSSVATLRLSVELPEEEDFTLQDDGLRFIYVISNTYGPDGEH 325
                         ::.:|.||..||.|.:.|:.:|:.|... || ....|.:.:|.:...|.|  
  Rat   258 -------------RRFKPALGRSWSFVPSTRILLEVFEGAG-TL-GRSQRTVRLIKSPRQPTG-- 305

  Fly   326 CLLRITDAGVV 336
             |..:.|.|.:
  Rat   306 -LQEVIDIGTL 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad51DNP_610466.2 P-loop_NTPase 80..336 CDD:304359 77/257 (30%)
radB 80..335 CDD:236482 76/256 (30%)
Rad51dNP_001100499.1 recomb_radA 10..305 CDD:131290 89/320 (28%)
Rad51_DMC1_radA 82..318 CDD:238543 77/261 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 83 1.000 Domainoid score I8177
eggNOG 1 0.900 - - E1_COG0468
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 89 1.000 Inparanoid score I5037
OMA 1 1.010 - - QHG55923
OrthoDB 1 1.010 - - D1214879at2759
OrthoFinder 1 1.000 - - FOG0006192
OrthoInspector 1 1.000 - - oto98440
orthoMCL 1 0.900 - - OOG6_105130
Panther 1 1.100 - - LDO PTHR46457
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5910
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.