Protein Alignment Rad51D and Dmc1

DIOPT Version :9

• Sequence 1: NP_610466.2
• Gene: Rad51D / 35937
• FlyBaseID: FBgn0033389
• Length: 336
• Species: Drosophila melanogaster
• Sequence 2: NP_034189.1
• Gene: Dmc1 / 13404
• MGIID: 105393
• Length: 340
• Species: Mus musculus
• Alignment Length: 339
• Identity: 79/339 - (23%)
• Similarity: 142/339 - (41%)
• Gaps: 73/339 - (21%)

  Fly    15 LLSEYQLNL-----LRKNNICSLIDFYDADEKKLHELWAINIQSVRELKKELS-LLPKGSV---- 69
            ||.::.:|:     |:...||::........:.|..:..::...|.::|:..: |:..|.:
Mouse    26 LLQKHGINMADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVEKIKEAANKLIEPGFLTAFQ 90

  Fly    70 --DEGTPDFNYDTGIEELDKLL-DSVEQPFKPGRVWELCGQPGVGKTQLLYTLALNFVWKHSQ-- 129
              :.....|:..||.:|.|||| ..:|..    .:.|..|:...|||||.:||.:.     :|
Mouse    91 YSERRKMVFHITTGSQEFDKLLGGGIESM----AITEAFGEFRTGKTQLSHTLCVT-----AQLP 146

  Fly   130 --------AVLFIDTKREFSCKRIQDMLRAREVDEEASERAMKGIRVVQAATGADINDLLKSFDH 186
                    .::||||:..|...|::|:.....||.||   .:..:...:|.|.....:||   |:
Mouse   147 GTGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHEA---VLDNVLYARAYTSEHQMELL---DY 205

  Fly   187 QLTAETHASMQT-KLVLIDSLAACFAF-YRGRRMRDVRKSVLTELACKIRKLALRGVAFVIGNVS 249
             :.|:.|..... ||::|||:.|.|.. :.||.....|:..|.::..:::|::..      .||:
Mouse   206 -VAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEE------YNVA 263

  Fly   250 FFENNKDSCGDDGEQNGDDEEVTRQ--QLEPMLGSYWSSVATLRLSV----------------EL 296
            .|..|: ...|.|      ..:|.|  ..:|:.|...:..:|.|:|:                |:
Mouse   264 VFVTNQ-MTADPG------ATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEM 321

  Fly   297 PEEE-DFTLQDDGL 309
            ||.| .|.:...|:
Mouse   322 PENEATFAITAGGI 335

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad51D	NP_610466.2	P-loop_NTPase	80..336	CDD:304359	67/262 (26%)
		radB	80..335	CDD:236482	67/262 (26%)
Dmc1	NP_034189.1	recomb_DMC1	24..338	CDD:131292	79/339 (23%)
		HHH_5	25..79	CDD:291205	9/52 (17%)
		Rad51_DMC1_radA	101..336	CDD:238543	67/264 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0468
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810