DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8008 and rtet

DIOPT Version :9

Sequence 1:NP_001137623.1 Gene:CG8008 / 35935 FlyBaseID:FBgn0033387 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_524429.1 Gene:rtet / 42500 FlyBaseID:FBgn0028468 Length:477 Species:Drosophila melanogaster


Alignment Length:558 Identity:114/558 - (20%)
Similarity:207/558 - (37%) Gaps:149/558 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SNAFTLEKLRNLQWEKVFRMFYIEPVVFMLLFSHTLSGTIQRNQVIYQTCTVIFHYNESDCKQLD 70
            :.|...|...|.:.||...|.||   :|:.|....|:.||    ::....:::.||.::|     
  Fly    30 NKALDKEASENGKPEKSDPMIYI---IFVSLLFDLLAFTI----ILPLLPSLLEHYRQND----- 82

  Fly    71 VKNASAEINAIETELQPYVANLFLARTLLESIVPAFCGLFIGSW---------------SDHYGR 120
                |:.:.|:.|:...:...|..|.   :..:....|.|:||.               ||:|||
  Fly    83 ----SSGLYAVLTDRVRWFQQLLGAP---DRYISVLFGGFLGSMFSFLQFVASPIVGGLSDYYGR 140

  Fly   121 KPLLIVSMIGFSASFLMMAAICELSSYYVVNPWWYIMAAVPHSLLGGNCVFSVAAFCFISDITDC 185
            ||:|:....|.:.|:|:.|.    ||.:.:    :::|.....:..||....::.   |:|::..
  Fly   141 KPVLLACASGIALSYLIWAC----SSNFAL----FVLARFVGGISKGNISLCMSV---ITDVSSV 194

  Fly   186 KSRPYRMIFMESLFFIGLTSGSLLSS-FVYAAVGSAATIGISGCIVTFATLFIIFFVPESLHFHK 249
            |:|...|..:...|.:|...|.::.: |...:..|.:|               .|.:|..|.|..
  Fly   195 KTRGRGMALVGVAFSLGFIVGPMIGALFAIFSDKSGST---------------WFVLPSLLAFGL 244

  Fly   250 EQETKNAITANVEKECIDSKVPITACDLQLDRVAIDCPPNFMNDEEPGKDKRMELPTPATPAMSF 314
                  |:          ..:.:.||.|:               |...|:||::   ..:.|:|:
  Fly   245 ------AV----------GDLVVLACCLR---------------ETLPKEKRVK---EISSALSY 275

  Fly   315 DDDLLAKYVERLPQKAEERKRQEAEEQAKKAGLFSMVHIRDMISTCFKRRDHHARAIIWLVTLAM 379
            ...||                       ..:.:|....|:::     .::|..|...|.||   .
  Fly   276 GLQLL-----------------------NFSAIFRFAAIKNV-----PKKDIAALRSIGLV---Y 309

  Fly   380 FLSIFVFDGVMTVMYLFVREKFHWTVRDYT-FFETVSHLVPMI-GALIGFLILRKVFRLSVVTLA 442
            ||.:|::.|:...:...:..||.:|..|.. .|.|...::.:: |:::..|...|:...::.:|.
  Fly   310 FLYLFLYSGLEFTVTFLMYHKFGYTSMDQAKMFLTTGVIMTLLQGSVVRRLPEAKIKGYAIFSLY 374

  Fly   443 LL--AFFSEILNNLAKGFATMPWHMYLSVTLGVFRSISGPMC-RTIVSNIVPPSDLGKIFSIKNV 504
            |:  ||   ::..||:|...    :|..:||....:.....| .|:||........|.:..|...
  Fly   375 LIVPAF---VVVGLAEGSRM----LYAGMTLFAISTAFAVTCLTTLVSKYGNDDQKGSVLGIFRS 432

  Fly   505 LQSFA----PFVAAPLY-------TLIYKRSLTTYPGL 531
            |.:.|    |.|....:       |.|....|..||.:
  Fly   433 LGALARALGPVVGCIAFWCVGSRITYIAGGLLLIYPAM 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8008NP_001137623.1 MFS 101..547 CDD:119392 93/463 (20%)
MFS_1 101..>261 CDD:284993 37/175 (21%)
MFS_1 375..>558 CDD:284993 39/173 (23%)
rtetNP_524429.1 MFS 105..466 CDD:119392 91/458 (20%)
MFS_1 108..442 CDD:284993 86/431 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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