DRSC/TRiP Functional Genomics Resources

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Protein Alignment shrb and Chmp4bl1

DIOPT Version :9

Sequence 1:NP_610462.3 Gene:shrb / 35933 FlyBaseID:FBgn0086656 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001263385.1 Gene:Chmp4bl1 / 679886 RGDID:1583604 Length:224 Species:Rattus norvegicus


Alignment Length:233 Identity:134/233 - (57%)
Similarity:164/233 - (70%) Gaps:20/233 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFFGKMFG------GKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKR 59
            ||.|||:||      ||.:  ||..||||:||:||.||.|||||||.|||.||..|:|:.:||||
  Rat     1 MSVFGKLFGAGWGKAGKGD--PTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKR 63

  Fly    60 VALQALKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTAVLTTMKNAADALKRAHQNMDVDKV 124
            .||||||:|||.||||.||||||||||.||||||:|||||.||..|..||.|:|.||.|||:|||
  Rat    64 AALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKV 128

  Fly   125 HDMMDDIAEQQDVAREISDAISNPVAFGADLDDEDLERELDELEQENFDKEIIGI--PEPTPTLP 187
            .::|.|||:||::|.:.|.|||.||.||.:.|.::|..||:|||||..||.::.|  ||..| ||
  Rat   129 DELMQDIADQQELAEQTSTAISKPVGFGEEFDKDELMAELEELEQEELDKNLLEISGPETVP-LP 192

  Fly   188 EAPTEDLPEKAKEKKKATTTTAVEDDDDPDMKQLLSWS 225
            ..|:..||.|..:||        |::|| |||:|.:|:
  Rat   193 NVPSVALPSKPAKKK--------EEEDD-DMKELENWA 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shrbNP_610462.3 Snf7 20..193 CDD:281366 110/174 (63%)
Chmp4bl1NP_001263385.1 Snf7 24..198 CDD:281366 110/174 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341055
Domainoid 1 1.000 210 1.000 Domainoid score I2720
eggNOG 1 0.900 - - E1_KOG1656
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H57102
Inparanoid 1 1.050 236 1.000 Inparanoid score I3311
OMA 1 1.010 - - QHG53573
OrthoDB 1 1.010 - - D1490465at2759
OrthoFinder 1 1.000 - - FOG0001179
OrthoInspector 1 1.000 - - otm46383
orthoMCL 1 0.900 - - OOG6_100985
Panther 1 1.100 - - O PTHR22761
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1162
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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