DRSC/TRiP Functional Genomics Resources

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Protein Alignment shrb and chmp4bb

DIOPT Version :9

Sequence 1:NP_610462.3 Gene:shrb / 35933 FlyBaseID:FBgn0086656 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_998622.1 Gene:chmp4bb / 406766 ZFINID:ZDB-GENE-040426-2812 Length:224 Species:Danio rerio


Alignment Length:231 Identity:136/231 - (58%)
Similarity:171/231 - (74%) Gaps:14/231 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFFGKMF--GGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKRVALQ 63
            ||.|||:|  |||....||..||||||||||.||.:||:|||.||:.||.||:||.:||||.|||
Zfish     1 MSVFGKLFGGGGKGGKGPTPQEAIQKLRETEEMLAEKQDFLEKKIDAELLIAKKNGTKNKRAALQ 65

  Fly    64 ALKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTAVLTTMKNAADALKRAHQNMDVDKVHDMM 128
            |||:|||.||||.||||||||||.||||||:|||||.||..|..||.|:|.||:|||:|||.|:|
Zfish    66 ALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLM 130

  Fly   129 DDIAEQQDVAREISDAISNPVAFGADLDDEDLERELDELEQENFDKEIIGI--PEPTPTLPEAPT 191
            .||.|||::|:|||||||.||.||.:.|:::|..||:|||||..||:::.|  ||..| ||..|:
Zfish   131 QDITEQQELAQEISDAISRPVGFGEEFDEDELMAELEELEQEELDKDLLQISGPEDVP-LPNVPS 194

  Fly   192 EDLPEK--AKEKKKATTTTAVEDDDDPDMKQLLSWS 225
            ..||:|  ..:||:       :::|:.||::|.:|:
Zfish   195 NPLPKKTAVAQKKR-------QEEDEDDMEELKAWA 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shrbNP_610462.3 Snf7 20..193 CDD:281366 115/174 (66%)
chmp4bbNP_998622.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21 11/19 (58%)
Snf7 22..158 CDD:281366 97/135 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..224 16/50 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581231
Domainoid 1 1.000 220 1.000 Domainoid score I2553
eggNOG 1 0.900 - - E1_KOG1656
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 252 1.000 Inparanoid score I3193
OMA 1 1.010 - - QHG53573
OrthoDB 1 1.010 - - D1490465at2759
OrthoFinder 1 1.000 - - FOG0001179
OrthoInspector 1 1.000 - - otm25007
orthoMCL 1 0.900 - - OOG6_100985
Panther 1 1.100 - - LDO PTHR22761
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1365
SonicParanoid 1 1.000 - - X1162
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.890

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