DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shrb and Vps20

DIOPT Version :9

Sequence 1:NP_610462.3 Gene:shrb / 35933 FlyBaseID:FBgn0086656 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_611686.2 Gene:Vps20 / 37581 FlyBaseID:FBgn0034744 Length:212 Species:Drosophila melanogaster


Alignment Length:224 Identity:68/224 - (30%)
Similarity:112/224 - (50%) Gaps:31/224 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GKMFG-GKKEVAPT----TGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKR-VALQ 63
            |.:|| ..|:.||:    ..:|:.:|::..:.|.:.|:.:|.::|::..:|||...:.:: .|..
  Fly     2 GALFGKTSKKTAPSRITDQDKAVLQLKQQRDRLKQYQKRIETQLENDRLLARKCLQQGRKDRAKL 66

  Fly    64 ALKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTAVLTTMKNAADALKRAHQNMDVDKVHDMM 128
            .|:|||..|..|...|..|..:|.....:|.|.....||..:|....|||:.|:.:|:|:|..:|
  Fly    67 LLRKKKYQESLLTNADKQLENLEKLAADIEFAQVEMKVLDGLKAGNAALKKVHEMLDIDEVERIM 131

  Fly   129 DD----IAEQQDVAREISDAISNPVAFGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEA 189
            |:    |.:||::...::|.::..       |:||:..|||.||.|...::       ...||:.
  Fly   132 DETREGIEKQQEIDAILTDVLTTQ-------DEEDVLAELDALEAEEEQQK-------GAQLPDV 182

  Fly   190 PTEDLP-----EKAKE--KKKATTTTAVE 211
            ||||||     |..:|  |.|||....||
  Fly   183 PTEDLPIPAEIESVEEPAKTKATKKVLVE 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shrbNP_610462.3 Snf7 20..193 CDD:281366 50/177 (28%)
Vps20NP_611686.2 Snf7 22..186 CDD:281366 50/177 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR22761
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.