DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shrb and Chmp4c

DIOPT Version :10

Sequence 1:NP_610462.3 Gene:shrb / 35933 FlyBaseID:FBgn0086656 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001017466.2 Gene:Chmp4c / 361916 RGDID:1564543 Length:232 Species:Rattus norvegicus


Alignment Length:238 Identity:116/238 - (48%)
Similarity:157/238 - (65%) Gaps:20/238 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFFGKMFGGKK----EVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKRVA 61
            ||..||.|.|.:    ..||:..||:.:|||||.|:.||||:||.:|:.||.:|:|:.|:|||.|
  Rat     1 MSKLGKFFKGSRSSRARAAPSAQEALARLRETEEMMAKKQEYLENRIQRELALAKKHGSQNKRAA 65

  Fly    62 LQALKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTAVLTTMKNAADALKRAHQNMDVDKVHD 126
            |||||:|||.||||.||||||||||.||||||:::|||.||..|..||.|:|..|:|||::|:.|
  Rat    66 LQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKAVHENMDLNKIDD 130

  Fly   127 MMDDIAEQQDVAREISDAISNPVAFGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPT 191
            :|.||.||||:|:|||:|.|..|.|....|:::|..||:|||||..:|::..:     .||..|:
  Rat   131 LMQDITEQQDIAQEISEAFSQRVQFADGFDEDELLAELEELEQEELNKKMTSM-----ELPNVPS 190

  Fly   192 EDLPEKAKEK---------KKATTTTAVEDDDDPDMKQLLSWS 225
            ..||.:...|         .:|.::...|:||  |.|||.:|:
  Rat   191 SSLPAQPSRKAGVPSSVHRSRAASSRRAEEDD--DFKQLAAWA 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shrbNP_610462.3 Snf7 20..193 CDD:460896 96/172 (56%)
Chmp4cNP_001017466.2 Intramolecular interaction with C-terminus. /evidence=ECO:0000250 1..153 89/151 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 8/21 (38%)
Snf7 24..190 CDD:460896 95/170 (56%)
Intramolecular interaction with N-terminus. /evidence=ECO:0000250 154..232 26/85 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 172..232 19/67 (28%)

Return to query results.
Submit another query.