DRSC/TRiP Functional Genomics Resources

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Protein Alignment shrb and Chmp4c

DIOPT Version :9

Sequence 1:NP_610462.3 Gene:shrb / 35933 FlyBaseID:FBgn0086656 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001017466.2 Gene:Chmp4c / 361916 RGDID:1564543 Length:232 Species:Rattus norvegicus


Alignment Length:238 Identity:116/238 - (48%)
Similarity:157/238 - (65%) Gaps:20/238 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFFGKMFGGKK----EVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKRVA 61
            ||..||.|.|.:    ..||:..||:.:|||||.|:.||||:||.:|:.||.:|:|:.|:|||.|
  Rat     1 MSKLGKFFKGSRSSRARAAPSAQEALARLRETEEMMAKKQEYLENRIQRELALAKKHGSQNKRAA 65

  Fly    62 LQALKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTAVLTTMKNAADALKRAHQNMDVDKVHD 126
            |||||:|||.||||.||||||||||.||||||:::|||.||..|..||.|:|..|:|||::|:.|
  Rat    66 LQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKAVHENMDLNKIDD 130

  Fly   127 MMDDIAEQQDVAREISDAISNPVAFGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPT 191
            :|.||.||||:|:|||:|.|..|.|....|:::|..||:|||||..:|::..:     .||..|:
  Rat   131 LMQDITEQQDIAQEISEAFSQRVQFADGFDEDELLAELEELEQEELNKKMTSM-----ELPNVPS 190

  Fly   192 EDLPEKAKEK---------KKATTTTAVEDDDDPDMKQLLSWS 225
            ..||.:...|         .:|.::...|:||  |.|||.:|:
  Rat   191 SSLPAQPSRKAGVPSSVHRSRAASSRRAEEDD--DFKQLAAWA 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shrbNP_610462.3 Snf7 20..193 CDD:281366 96/172 (56%)
Chmp4cNP_001017466.2 Intramolecular interaction with C-terminus. /evidence=ECO:0000250 1..153 89/151 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 8/21 (38%)
Snf7 24..190 CDD:281366 95/170 (56%)
Intramolecular interaction with N-terminus. /evidence=ECO:0000250 154..232 26/85 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 172..232 19/67 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 210 1.000 Domainoid score I2720
eggNOG 1 0.900 - - E1_KOG1656
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 236 1.000 Inparanoid score I3311
OMA 1 1.010 - - QHG53573
OrthoDB 1 1.010 - - D1490465at2759
OrthoFinder 1 1.000 - - FOG0001179
OrthoInspector 1 1.000 - - otm46383
orthoMCL 1 0.900 - - OOG6_100985
Panther 1 1.100 - - O PTHR22761
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1162
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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