DRSC/TRiP Functional Genomics Resources

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Protein Alignment shrb and vps32

DIOPT Version :9

Sequence 1:NP_610462.3 Gene:shrb / 35933 FlyBaseID:FBgn0086656 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_594271.1 Gene:vps32 / 2542922 PomBaseID:SPAC1142.07c Length:222 Species:Schizosaccharomyces pombe


Alignment Length:226 Identity:87/226 - (38%)
Similarity:138/226 - (61%) Gaps:15/226 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFFGKMFGGKKEVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKRVALQAL 65
            ||.|.:.|||.:. ..||.:.|.:.:|...:..||:|.||.:|.::..||||||:.|||:||.||
pombe     1 MSGFLRWFGGNRS-KDTTKDTIVRFQEMLALYDKKEEVLERQIAEQTEIARKNATTNKRLALTAL 64

  Fly    66 KKKKRLEKQLQQIDGTLSTIEMQREALESANTNTAVLTTMKNAADALKRAHQNMDVDKVHDMMDD 130
            |:||..|.:|.:|:|:.:.||.|..::::||.|...|..|:..|:|:|...:.||.|||..:||.
pombe    65 KRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDK 129

  Fly   131 IAEQQDVAREISDAISNPVAFGADLDDEDLERELDELEQENFDKEIIGIPEP---TPTLPEAPTE 192
            |.:||.::.|||..||.||...|::|:::|..|||||:|...|.:::|..:|   ||.:|..|::
pombe   130 IRDQQTISEEISTMISTPVGLNAEIDEDELANELDELQQMELDSKMLGAEKPPVHTPAVPAVPSQ 194

  Fly   193 --DLPEKAKEKKKATTTTAVEDDDDPDMKQL 221
              |||..:|.:         |.|::.::::|
pombe   195 VKDLPSISKPQ---------ELDEEEELRKL 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shrbNP_610462.3 Snf7 20..193 CDD:281366 72/177 (41%)
vps32NP_594271.1 Snf7 19..192 CDD:281366 71/172 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 138 1.000 Domainoid score I1235
eggNOG 1 0.900 - - E1_KOG1656
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H57102
Inparanoid 1 1.050 154 1.000 Inparanoid score I1286
OMA 1 1.010 - - QHG53573
OrthoFinder 1 1.000 - - FOG0001179
OrthoInspector 1 1.000 - - oto102106
orthoMCL 1 0.900 - - OOG6_100985
Panther 1 1.100 - - LDO PTHR22761
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1365
SonicParanoid 1 1.000 - - X1162
TreeFam 1 0.960 - -
1413.860

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