DRSC/TRiP Functional Genomics Resources

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Protein Alignment shrb and vps-32.1

DIOPT Version :9

Sequence 1:NP_610462.3 Gene:shrb / 35933 FlyBaseID:FBgn0086656 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001370608.1 Gene:vps-32.1 / 174091 WormBaseID:WBGene00016961 Length:221 Species:Caenorhabditis elegans


Alignment Length:227 Identity:126/227 - (55%)
Similarity:158/227 - (69%) Gaps:8/227 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFFGKMFGGKKEVAPTT-GEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKRVALQA 64
            ||.|||:|||:|:.||:| .|:||||||||.||.|||||||.|:.||...|.|..:||||:|||.
 Worm     1 MSLFGKIFGGRKQEAPSTPQESIQKLRETEEMLEKKQEFLEKKVIDEKQNAVKYGTKNKRMALQC 65

  Fly    65 LKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTAVLTTMKNAADALKRAHQNMDVDKVHDMMD 129
            |.:|:..||||..|||.||||..||||||:|:||..||..|..|:.|||.||.|||:|:|||:|:
 Worm    66 LNRKRNFEKQLAHIDGVLSTIGYQREALENASTNAEVLNVMGTASKALKAAHNNMDIDQVHDLME 130

  Fly   130 DIAEQQDVAREISDAISNPVAFGADLDDEDLERELDELEQENFDKEIIGIPEPTPTLPEAPTEDL 194
            ||||||:||.||::||||||.|...:||:||.|||:.||||..|||::....|..|||:.|...|
 Worm   131 DIAEQQEVANEIAEAISNPVGFSTAVDDDDLMRELEALEQEELDKELLDARAPPVTLPDTPNIAL 195

  Fly   195 PEKAKEKKKATTTTAVEDDDDPDMKQLLSWSN 226
            |.....:.:|       .:.|.|::.|.||:|
 Worm   196 PAVPASRPRA-------KEADKDLEDLESWAN 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shrbNP_610462.3 Snf7 20..193 CDD:281366 105/172 (61%)
vps-32.1NP_001370608.1 Snf7 21..194 CDD:397437 105/172 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159513
Domainoid 1 1.000 204 1.000 Domainoid score I1724
eggNOG 1 0.900 - - E1_KOG1656
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 235 1.000 Inparanoid score I2148
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53573
OrthoDB 1 1.010 - - D1490465at2759
OrthoFinder 1 1.000 - - FOG0001179
OrthoInspector 1 1.000 - - oto19875
orthoMCL 1 0.900 - - OOG6_100985
Panther 1 1.100 - - LDO PTHR22761
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1365
SonicParanoid 1 1.000 - - X1162
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.840

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