DRSC/TRiP Functional Genomics Resources

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Protein Alignment shrb and Chmp4b

DIOPT Version :9

Sequence 1:NP_610462.3 Gene:shrb / 35933 FlyBaseID:FBgn0086656 Length:226 Species:Drosophila melanogaster
Sequence 2:XP_038962625.1 Gene:Chmp4b / 100359642 RGDID:1309846 Length:224 Species:Rattus norvegicus


Alignment Length:231 Identity:136/231 - (58%)
Similarity:166/231 - (71%) Gaps:16/231 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFFGKMF---GGKK-EVAPTTGEAIQKLRETENMLIKKQEFLEAKIEDELNIARKNASKNKRVA 61
            ||.|||:|   |||. :..||..||||:||:||.||.|||||||.|||.||..|:|:.:||||.|
  Rat     1 MSVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAA 65

  Fly    62 LQALKKKKRLEKQLQQIDGTLSTIEMQREALESANTNTAVLTTMKNAADALKRAHQNMDVDKVHD 126
            |||||:|||.||||.||||||||||.||||||:|||||.||..|..||.|:|.||.|||:|||.:
  Rat    66 LQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDE 130

  Fly   127 MMDDIAEQQDVAREISDAISNPVAFGADLDDEDLERELDELEQENFDKEIIGI--PEPTPTLPEA 189
            :|.|||:||::|.|||.|||.||.||.:.|:::|..||:|||||..||.::.|  ||..| ||..
  Rat   131 LMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVP-LPNV 194

  Fly   190 PTEDLPEKAKEKKKATTTTAVEDDDDPDMKQLLSWS 225
            |:..||.|..:||        |::|| |||:|.:|:
  Rat   195 PSVALPSKPAKKK--------EEEDD-DMKELENWA 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shrbNP_610462.3 Snf7 20..193 CDD:281366 112/174 (64%)
Chmp4bXP_038962625.1 Snf7 24..198 CDD:397437 112/174 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 210 1.000 Domainoid score I2720
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 236 1.000 Inparanoid score I3311
OMA 1 1.010 - - QHG53573
OrthoDB 1 1.010 - - D1490465at2759
OrthoFinder 1 1.000 - - FOG0001179
OrthoInspector 1 1.000 - - otm46383
orthoMCL 1 0.900 - - OOG6_100985
Panther 1 1.100 - - LDO PTHR22761
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1162
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.980

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