DRSC/TRiP Functional Genomics Resources

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Protein Alignment alc and Prkab1

DIOPT Version :9

Sequence 1:NP_610460.1 Gene:alc / 35931 FlyBaseID:FBgn0260972 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_114182.2 Gene:Prkab1 / 83803 RGDID:71057 Length:270 Species:Rattus norvegicus


Alignment Length:349 Identity:148/349 - (42%)
Similarity:187/349 - (53%) Gaps:87/349 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGNASSS-VHMQRER-HKSTDLSTPSSPAHFRDSIGGGGAGQGGSAGAAALGAAAGAVGAAGGGG 63
            |||.||. ..::|:. ||     ||.     |||.||                            
  Rat     1 MGNTSSERAALERQAGHK-----TPR-----RDSSGG---------------------------- 27

  Fly    64 GGGGGQAFSFDKKHTAVLNEGSSQEDDDPYYTGTGTGSTRRGTAHDDATSAVTRDHSSMDNNEEE 128
                    :.|.....:|.:  |.||.|.::|             ::..:....:..:..::.|.
  Rat    28 --------TKDGDRPKILMD--SPEDADIFHT-------------EEMKAPEKEEFLAWQHDLEV 69

  Fly   129 EEAAVGAEPATGSQLTGDEDDIRKTALPTVLRWDGGGKNVTISGTFSDWKPMAMVRSHQNFVTII 193
            .|.|    ||              .|.|||.||.||||.|.:||:|::|..:.:.||..|||.|:
  Rat    70 NEKA----PA--------------QARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSQNNFVAIL 116

  Fly   194 DLPEGDHQYKFCVDGEWKHDPKLKSVENAEGQRNNLVSVRESDFEVFQALAKDSENVTNYAEKE- 257
            |||||:|||||.|||:|.|||....|.:..|..||::.|:::|||||.||..||:..::.:|.. 
  Rat   117 DLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELSS 181

  Fly   258 -----YSQEVPQVKPWEKVSGPPVLPPHLLQVILNKDTPLSCEPTLLPEPNHVMLNHLYALSIKD 317
                 |.||....||.|:...||:||||||||||||||.:||:|.||||||||||||||||||||
  Rat   182 SPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKD 246

  Fly   318 GVMVLSATHRYRKKYVTTLLYKPI 341
            |||||||||||:||||||||||||
  Rat   247 GVMVLSATHRYKKKYVTTLLYKPI 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alcNP_610460.1 AMPK1_CBM 156..238 CDD:293169 43/81 (53%)
AMPKBI 254..341 CDD:214973 67/92 (73%)
Prkab1NP_114182.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 18/89 (20%)
Glycogen-binding domain 68..163 51/112 (46%)
AMPK1_CBM 78..161 CDD:406865 43/82 (52%)
AMPKBI 181..270 CDD:214973 66/88 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335608
Domainoid 1 1.000 133 1.000 Domainoid score I4927
eggNOG 1 0.900 - - E1_KOG1616
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H38160
Inparanoid 1 1.050 252 1.000 Inparanoid score I3129
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D511710at33208
OrthoFinder 1 1.000 - - FOG0001107
OrthoInspector 1 1.000 - - otm44771
orthoMCL 1 0.900 - - OOG6_101253
Panther 1 1.100 - - LDO PTHR10343
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X946
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.760

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