DRSC/TRiP Functional Genomics Resources

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Protein Alignment alc and Prkab2

DIOPT Version :9

Sequence 1:NP_610460.1 Gene:alc / 35931 FlyBaseID:FBgn0260972 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_072149.1 Gene:Prkab2 / 64562 RGDID:620905 Length:271 Species:Rattus norvegicus


Alignment Length:322 Identity:142/322 - (44%)
Similarity:180/322 - (55%) Gaps:73/322 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 GGSAGAAALGAAAGAVGAAGGGGGGGGGQAFSFDKKHTAVLNEGSSQEDDDPYYTGTGTGSTRRG 105
            |.:......|...||..|...|||.|.|      |:|..::  ||:   |||             
  Rat     2 GNTTSERVSGERHGAKAARAEGGGHGPG------KEHKIMV--GST---DDP------------- 42

  Fly   106 TAHDDATSAVTRDHSSMDNNEEEEEAAVGAEPATGSQLTGD----------EDDIRKT--ALPTV 158
                                      :|.:.|  .|:|.||          :|.::.|  |.|||
  Rat    43 --------------------------SVFSLP--DSKLPGDKEFVPWQQDLDDSVKPTQQARPTV 79

  Fly   159 LRWDGGGKNVTISGTFSDWK-PMAMVRSHQNFVTIIDLPEGDHQYKFCVDGEWKHDPKLKSVENA 222
            :||..|||.|.|||:|::|. .:.:::||.:||.|:|||||:|||||.|||:|.|||....|.:.
  Rat    80 IRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQ 144

  Fly   223 EGQRNNLVSVRESDFEVFQALAKDS--------ENVTNYAEKEYSQEVPQVKPWEKVSGPPVLPP 279
            .|..|||:.|::||||||.||..||        .::::.....|.||:...:..|:...||:|||
  Rat   145 LGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPP 209

  Fly   280 HLLQVILNKDTPLSCEPTLLPEPNHVMLNHLYALSIKDGVMVLSATHRYRKKYVTTLLYKPI 341
            |||||||||||.:||:|.|||||||||||||||||.||.||||||||||:||||||||||||
  Rat   210 HLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSTKDSVMVLSATHRYKKKYVTTLLYKPI 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alcNP_610460.1 AMPK1_CBM 156..238 CDD:293169 44/82 (54%)
AMPKBI 254..341 CDD:214973 62/86 (72%)
Prkab2NP_072149.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..47 18/94 (19%)
AMPK1_CBM 77..160 CDD:293169 44/82 (54%)
AMPKBI 182..271 CDD:214973 62/88 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 133 1.000 Domainoid score I4927
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 252 1.000 Inparanoid score I3129
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D511710at33208
OrthoFinder 1 1.000 - - FOG0001107
OrthoInspector 1 1.000 - - otm44771
orthoMCL 1 0.900 - - OOG6_101253
Panther 1 1.100 - - O PTHR10343
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X946
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.970

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