DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alc and prkab1b

DIOPT Version :10

Sequence 1:NP_610460.1 Gene:alc / 35931 FlyBaseID:FBgn0260972 Length:341 Species:Drosophila melanogaster
Sequence 2:XP_073765260.1 Gene:prkab1b / 335232 ZFINID:ZDB-GENE-030131-7172 Length:293 Species:Danio rerio


Alignment Length:206 Identity:123/206 - (59%)
Similarity:149/206 - (72%) Gaps:10/206 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 DEDDIRKTAL---PTVLRWDGGGKNVTISGTFSDW-KPMAMVRSHQNFVTIIDLPEGDHQYKFCV 206
            |::...||.|   |||.||.|.||.:.:||:|::| ..:.:.:||.|||.|||||||:|||||.|
Zfish    88 DQESDSKTPLEERPTVFRWKGPGKEIYLSGSFNNWATKIPLNKSHNNFVAIIDLPEGEHQYKFYV 152

  Fly   207 DGEWKHDPKLKSVENAEGQRNNLVSVRESDFEVFQALAKDSENVTNYAEKE------YSQEVPQV 265
            ||.|..|||...|.|..|..||::.||::|||||.||..|||...:.::..      |.|:....
Zfish   153 DGHWTLDPKEPVVTNKSGVVNNVIKVRKTDFEVFDALKTDSEKCADMSDLSSSPPGPYHQDPYST 217

  Fly   266 KPWEKVSGPPVLPPHLLQVILNKDTPLSCEPTLLPEPNHVMLNHLYALSIKDGVMVLSATHRYRK 330
            |..:|:..||:||||||||:|||||.:||:|||||||||||||||||||||||||||||||||:|
Zfish   218 KSEDKLRSPPILPPHLLQVLLNKDTGISCDPTLLPEPNHVMLNHLYALSIKDGVMVLSATHRYKK 282

  Fly   331 KYVTTLLYKPI 341
            |||||||||||
Zfish   283 KYVTTLLYKPI 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alcNP_610460.1 AMPK1_CBM 155..238 CDD:465176 45/86 (52%)
AMPKBI 254..341 CDD:214973 64/92 (70%)
prkab1bXP_073765260.1 None

Return to query results.
Submit another query.