DRSC/TRiP Functional Genomics Resources

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Protein Alignment alc and F46H5.7

DIOPT Version :10

Sequence 1:NP_610460.1 Gene:alc / 35931 FlyBaseID:FBgn0260972 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_001360046.1 Gene:F46H5.7 / 180987 WormBaseID:WBGene00018522 Length:578 Species:Caenorhabditis elegans


Alignment Length:163 Identity:37/163 - (22%)
Similarity:67/163 - (41%) Gaps:31/163 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 TGSTRRGTAHDDATSAVTRDHSSMDNNEEEEEAAVGAEPATGSQLTGDEDDIRKTALPTV----- 158
            |.:::..:.:|.....| |.|||......:......:...|.:...|........|:|::     
 Worm   417 TANSKIQSLNDQLIQEV-RSHSSTMTIPTDGFTISQSNQGTWNLANGSNQPCFTGAIPSIPLVSA 480

  Fly   159 LRWDGG----------GKNVT-----------ISGTFSDWK---PMAMVRSHQNFVTIIDLPEGD 199
            |.:.|.          |:|||           ::|:|.:||   ....:.|.:..|| ::|..|.
 Worm   481 LPFAGANPFIFGGANEGRNVTLTISNTEQEVYLTGSFINWKCTLKCEKLVSGKKGVT-VNLTRGR 544

  Fly   200 HQYKFCVDGEWKHDPKLKSVENAEGQRNNLVSV 232
            |:::|.::|||......:.|.|..|.:||::.|
 Worm   545 HEFRFMINGEWATSSDYQQVPNGLGGQNNIIFV 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alcNP_610460.1 AMPK1_CBM 155..238 CDD:465176 27/107 (25%)
AMPKBI 254..341 CDD:214973
F46H5.7NP_001360046.1 NTD_TDP-43 17..82 CDD:410991
SMC_N <109..444 CDD:481474 7/27 (26%)
E_set_AMPKbeta_like_N 499..577 CDD:199889 22/78 (28%)
Blue background indicates that the domain is not in the aligned region.

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