DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18659 and SCD1

DIOPT Version :9

Sequence 1:NP_665880.2 Gene:CG18659 / 35929 FlyBaseID:FBgn0027561 Length:908 Species:Drosophila melanogaster
Sequence 2:NP_850959.1 Gene:SCD1 / 841327 AraportID:AT1G49040 Length:1187 Species:Arabidopsis thaliana


Alignment Length:610 Identity:132/610 - (21%)
Similarity:217/610 - (35%) Gaps:181/610 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 VPAGVIVESFPEGFRDQEVLTGIPSFAFPCDTTSTSVQTYSFVHTTGDSKWRFGFC--------- 93
            :|||  ||....||     ::..|: :||        ::|..|.|.||....|..|         
plant    61 LPAG--VEFHSSGF-----VSSDPA-SFP--------RSYPIVLTEGDGSKIFVSCIAFRDRVCE 109

  Fly    94 ------RQDPRT--NTAMVLITYLPWHDTFLKLLPVLAELRRTDPNGFRTFLSE----------A 140
                  |..|.|  :..:.|:::.|   .|..|...|.|:      ....|.||          |
plant   110 DIIEAYRLPPNTYADKCICLVSHAP---NFRVLRNSLEEI------FVLCFSSEGSCKPLWDIIA 165

  Fly   141 Y---NQGIPDCGGSLKVYYSAGQSHFTFERPLQFQLPSMPENHNLNLYYNFVEPKEMIAVFAAML 202
            |   |..:|..|.. :|.::......:.|.|.:..||.  .:.:|......::...:|.:|.::|
plant   166 YMVSNVPLPTPGKD-RVLFAVENCLLSVEAPPEDSLPQ--ADISLQPLVQCLDVDNLIKLFTSVL 227

  Fly   203 AERRIIFTSRHLDRLSSCIQAANAFLYPMVWQHIFIPVLPWEFKDYLGAPMPYLIG--------- 258
            .||||:..|.....|:...::....:||..|..::||:|.:...||:.||.||::|         
plant   228 VERRILIRSNKYSLLTLVSESICHLIYPFRWLQVYIPLLFFSGVDYIDAPTPYMMGLHSDVDTSN 292

  Fly   259 ------------------------VPEPVLETVTSDEL----GEVVILNCDTKIFESPFDDVHNL 295
                                    :|||...|:.:|.|    ..||.:: ..|.|.   :.|...
plant   293 LAMDGVVVVDLDINQITTSEEIPQIPEPEFSTLRNDILKLLHPNVVAID-QLKGFG---NSVEQC 353

  Fly   296 PTEIVSQLKKHLNHTHDHIGDRISKIFLNALVQLIGGYRDAVEYHENSKTFNSQKFIESRPAHL- 359
            |    ..|.|.....||.   ::..|||.....::||||:.:|    :|.|::..|::.|.... 
plant   354 P----KSLSKPWGEDHDL---QLRVIFLKCFASILGGYRNFIE----NKVFSTDAFLKRRSRSTN 407

  Fly   360 ---RPFLAKMMDLQIFAQFIDDRLT----------MLNSGLG-----------FSDEFELETVRY 400
               .|.|.:.:....|..:::.||:          .|...:|           .|.|.|:.|:..
plant   408 QPPEPMLVQFLGSFAFLDYLERRLSSDEKSTNLLEKLQDAVGRGQDAMSILPKSSMEPEIITIAE 472

  Fly   401 AEKKKRGRNYAIMKNLKDKTNPAVKSAVKSVKEGSRGMKTAYKGFKTKLRENGNQFGGTHFHFGL 465
            .|.::....|..     |:...:|:|  :..:|..:.:..|..|   .|..||.       |...
plant   473 PEVEESATRYTY-----DRFPASVRS--EEQEEKRKQILAAASG---ALESNGR-------HPPS 520

  Fly   466 GSPNHSDRPDGTS--------------------GGYVRGGKAIGAAHHSAPSSPVTSKRLDGIAS 510
            ..|..:.:.|..|                    |.::|..|.      .:...|::|.....|.:
plant   521 SPPGKNTKEDNFSSMERAAERERMVLDIQVKLQGLWLRLLKL------GSDEDPLSSFEYGTILA 579

  Fly   511 V--TGSSGSGGSGARE-PREFLRRG 532
            :  :.:.|.||||..| .||.|..|
plant   580 LIESDAEGIGGSGFIECIREHLYSG 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18659NP_665880.2 uDENN 10..95 CDD:214824 17/71 (24%)
DENN 98..282 CDD:280329 51/235 (22%)
dDENN 315..379 CDD:129037 15/67 (22%)
SCD1NP_850959.1 uDENN 1..103 CDD:214824 17/57 (30%)
DENN 123..306 CDD:214823 42/194 (22%)
dDENN 366..430 CDD:129037 16/70 (23%)
WD40 835..1131 CDD:238121
WD40 repeat 904..937 CDD:293791
WD40 repeat 943..978 CDD:293791
WD40 repeat 983..1019 CDD:293791
WD40 repeat 1026..1059 CDD:293791
WD40 repeat 1065..1103 CDD:293791
WD40 repeat 1109..1150 CDD:293791
WD40 repeat 1157..1181 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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