DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18659 and rme-4

DIOPT Version :9

Sequence 1:NP_665880.2 Gene:CG18659 / 35929 FlyBaseID:FBgn0027561 Length:908 Species:Drosophila melanogaster
Sequence 2:NP_001359519.1 Gene:rme-4 / 185870 WormBaseID:WBGene00004375 Length:663 Species:Caenorhabditis elegans


Alignment Length:808 Identity:222/808 - (27%)
Similarity:341/808 - (42%) Gaps:202/808 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RIKNDVKKLFEFWCEV-TPTPGLERGTSSRSGGPAVPAGVIVESFPEGFRDQEVLTGIPSFAFPC 67
            |.:.||..|::.:||: .|.||.:             ..::...:|:.|.|..::..:..|||||
 Worm     5 RYRADVATLYDVFCELDAPKPGEK-------------LAILRLQYPDDFHDPAIVKSVQQFAFPC 56

  Fly    68 ---DTTSTSVQTYSFVHTTGDSKWRFGFCRQDPRTNTAMVLITYLPWHDTFLKLLP----VLAEL 125
               :....:||.:|||.|..:||:.|||||..|||:|.:..::...|.:.|.|.|.    |:...
 Worm    57 QLREVEVDAVQLFSFVLTDSNSKFSFGFCRYTPRTDTCICFLSGFFWPNVFFKALNDISLVIGSA 121

  Fly   126 RRTDPNGFRTFLSEAYNQGIPDCGGSLKVYYSAGQSH-------FTFERPLQFQLPSMPENHNLN 183
            :|.|   ..:.|::.|:..||:....|: :..:.|:.       |..:.|...:||::..:....
 Worm   122 QRED---VESVLTKFYHTDIPNIDEYLR-FADSNQTDGHNYRVVFAEKIPDHTRLPTLGSDKFFL 182

  Fly   184 LYYNFVEPKEMIAVFAAMLAERRIIFTSRHLDRLSSCIQAANAFLYPMVWQHIFIPVLPWEFKDY 248
            .:||.::|::|:|:||::|.||||:||.|.:..||||:.|.:..||||.||.:||.:||....|.
 Worm   183 EFYNAIDPRQMLAIFASLLKERRILFTGRKVGSLSSCLHAVSMLLYPMCWQSVFITILPESLVDM 247

  Fly   249 LGAPMPYLIGVPEPVLETVTSD--ELGEVVILNCDTKIFESPFDDVHNLPTEIVSQLKKHLNHTH 311
            :.||||||||||:.|||....:  ::|||||::.|.|...||||||..:|.|:|:.||..| .:.
 Worm   248 VMAPMPYLIGVPKTVLENARLNIRDIGEVVIVDIDEKTLTSPFDDVAAMPQEVVNFLKAQL-RSQ 311

  Fly   312 DHIGDRISKIFLNALVQLIGGYR-----DAVEYHENSKTFNSQKFIESRPAHLRPFLAKMM---D 368
            ..:.|..:|.||.|:|.|.|.|.     |..|    :..|:.::|:..:....:.:::.::   .
 Worm   312 SAMDDTFAKHFLRAMVMLFGDYTSGFTGDTPE----TLVFSKERFVVQQKPSYQAYVSSLLGADG 372

  Fly   369 LQIFAQFIDDRLTMLNSGLGFSDEFELETVRYAEKKKRGRNYAIMKNLKDKTNPAVKSAVKSVKE 433
            :|...:||.|||.:...|....|:||:| :...:.|.|    .:.:|..|     |..|:|    
 Worm   373 VQYLERFIHDRLELYKDGHVPGDQFEIE-IEQMDLKNR----PVKENAND-----VIGALK---- 423

  Fly   434 GSRGMKTAYKGFKTKLRENGNQFGGTHFHFGLGSPNHSDRPDGTSGGYVRGGKAIGAAH--HSAP 496
             :.|::.|.:..|...||                              :|...|...||  :...
 Worm   424 -TSGIQIANRLQKLTPRE------------------------------IRKAAARKKAHNQNGFE 457

  Fly   497 SSPVTSKRLDGIASVTGSSGSGGSGAREPREFLRRGPVPLAMSSSSSHIQPNGHAYGASAGAHYG 561
            .||::...|...|:...|..:.|.    |.| .|...||:|......                  
 Worm   458 QSPMSFDNLQWDATFQKSDENEGF----PVE-TRMDNVPVANLIDLD------------------ 499

  Fly   562 HHLAASPAVSSASSLCSSSE---MNLSQELQNHPLFKTPAVDRSL-KPNAEHRRGAAP--PARPP 620
                 .|:.||||.|.|..|   :..|:...|:....:.|:.... .|.|....|:||  |:|||
 Worm   500 -----EPSTSSASGLTSVDEQYFLRPSELATNNRKSPSGAIGNVFADPFATSPEGSAPPLPSRPP 559

  Fly   621 PPQSTPASYYNHPYAAHPH------VESKPPRHTSTP--TRPRQPLPTADSSSFDSPPDVQS--- 674
            ||             .||.      |:|..|..:|.|  ...:|....|..|...|.|...:   
 Worm   560 PP-------------LHPRMIPGSSVQSISPSGSSAPHLLHFQQSHQWAQVSQVGSVPSAMNPSA 611

  Fly   675 ------PPIPPRRQGSSNAIVAATAAAVSAEISKLERNCWKDEPGNDSVRSSNASSSSATSSSSG 733
                  ||:||||..|                                      ...|:|||...
 Worm   612 PDWYAPPPLPPRRPAS--------------------------------------VGPSSTSSGQP 638

  Fly   734 ASFVTAASTFSHLNVSDPPIPTPRAKRE 761
            |   ||.:|.|.:.|..||:   |:|.|
 Worm   639 A---TAFATSSAIRVPPPPV---RSKWE 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18659NP_665880.2 uDENN 10..95 CDD:214824 26/88 (30%)
DENN 98..282 CDD:280329 69/196 (35%)
dDENN 315..379 CDD:129037 16/71 (23%)
rme-4NP_001359519.1 uDENN 12..86 CDD:214824 25/86 (29%)
DENN 91..282 CDD:214823 68/194 (35%)
dDENN 315..383 CDD:129037 16/71 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157456
Domainoid 1 1.000 114 1.000 Domainoid score I3810
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 255 1.000 Inparanoid score I1954
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001916
OrthoInspector 1 1.000 - - oto17436
orthoMCL 1 0.900 - - OOG6_103678
Panther 1 1.100 - - LDO PTHR13196
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4852
SonicParanoid 1 1.000 - - X1448
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.920

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