DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Su(var)2-10 and pias4b

DIOPT Version :9

Sequence 1:NP_724749.1 Gene:Su(var)2-10 / 35927 FlyBaseID:FBgn0003612 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_956637.2 Gene:pias4b / 393314 ZFINID:ZDB-GENE-040426-1298 Length:485 Species:Danio rerio


Alignment Length:498 Identity:168/498 - (33%)
Similarity:241/498 - (48%) Gaps:103/498 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 STKYKECEQMVQMLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTNL--ELLAPKVQEVYAQS 101
            ||...|...|::.|||.||:.:||.:..|.:|.|.|||.|:...|..:.  |||: .|:|::   
Zfish    32 STDVLEAAVMLETLRVTELRLLLSKMGKSKSGLKKDLQKRVTDLLHNDCSPELLS-AVRELH--- 92

  Fly   102 VQEQNATLQYIDPTRM--YSHIQLPPTVQPNPVGLVGSGQGVQVPGGQMNVVGGAPFLHTHSINS 164
                  .|:.|..:|.  ...|.:|.::.|                      ||.|     |..|
Zfish    93 ------DLRQISKSRRSGIEIISMPESLSP----------------------GGTP-----SPKS 124

  Fly   165 QLPIHPDVRLKKLAFYDVLGTLIKPSTLVPRNTQRVQEVPFYFTLTPQQATEIASNRDIRNSSKV 229
            ..|     ::.||.||.:|.|:|.|:.|||.....:|...|.|.|:..|...|.::|.       
Zfish   125 AGP-----QMIKLPFYQMLETIIPPTPLVPTYGGAMQNSDFLFHLSESQQALIQNSRS------- 177

  Fly   230 EHAIQVQLRFCLVETSCDQEDCFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRPVNVTSNVK 294
            ...:||.||.|..|:...:||.:|||:.|.||:..|.:.....:|:..:||.||.||:::||::.
Zfish   178 SQPVQVVLRICYSESIGVEEDQYPPNICVSVNHNNCPVQCTYSSNKLGLEPSRPCRPIDITSDLY 242

  Fly   295 LSPTVTNTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKTKGVKPADYTRGLIKEKLTEDADC 359
            ||  .||..||.| .::.:||.:|||||:.::..|||.::::..|:..|..|..:.|||..|.:.
Zfish   243 LS--FTNRFTVLW-GNFGKSYSVAVYLVRLVSCQQLLDQLRSSSVEQQDVCRLRVSEKLRSDPET 304

  Fly   360 EIATTMLKVSLNCPLGKMKMLLPCRASTCSHLQCFDASLYLQMNERKPTWNCPVCDKPAIYDNLV 424
            |:|||.|:|||.|||.|::|.:|||:..|:||||||||.||||||:||.|:||||.:.|.:|.|.
Zfish   305 EVATTGLQVSLICPLVKLRMSVPCRSRGCAHLQCFDASFYLQMNEKKPRWSCPVCHRYAPFDELR 369

  Fly   425 IDGYFQEVLGSSLLKSDDTEIQLHQDGSWSTPGLRSETQILDTPSKPAQKVEVISDDIELISDDA 489
            ||...::||.||  ..|..||:...|.:|                                    
Zfish   370 IDSLLRDVLESS--GEDVEEIKYLSDSTW------------------------------------ 396

  Fly   490 KPVKRD---------LSPAQDEQPTSTSNSETVDLTLSDSDDD 523
            |.||.|         |.|.:....:.......||||.|.|||:
Zfish   397 KAVKHDKSNQNKGSALHPVKHNVNSKPVRDAVVDLTQSSSDDE 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)2-10NP_724749.1 SAP 49..83 CDD:128789 14/33 (42%)
PINIT 171..307 CDD:291022 48/135 (36%)
zf-MIZ 368..417 CDD:280964 33/48 (69%)
pias4bNP_956637.2 SAP 42..76 CDD:128789 14/33 (42%)
PINIT 131..260 CDD:291022 49/138 (36%)
zf-MIZ 313..360 CDD:280964 32/46 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580726
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2169
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1205949at2759
OrthoFinder 1 1.000 - - FOG0000526
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10782
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X350
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
98.810

Return to query results.
Submit another query.