DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)2-10 and tna

DIOPT Version :9

Sequence 1:NP_724749.1 Gene:Su(var)2-10 / 35927 FlyBaseID:FBgn0003612 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001368945.1 Gene:tna / 39217 FlyBaseID:FBgn0026160 Length:1186 Species:Drosophila melanogaster


Alignment Length:669 Identity:143/669 - (21%)
Similarity:221/669 - (33%) Gaps:228/669 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 GSGQ--GVQVPGGQMNVVGGA------PFL-------HTHSI---NSQLPI-----------HPD 171
            ||||  |:|..||......||      |:.       :.||.   |...|:           :||
  Fly   536 GSGQSAGMQQAGGMCPAGPGAVATTGNPYQNQGFQQNYQHSPVPGNPTPPLTPACSVPYVSPNPD 600

  Fly   172 VR-------LKKLAFYDVLGTLIKPSTLVPRNTQRVQEVPFYFTLTPQQATEIASNRDIRNSSKV 229
            ::       ..:|.|....|.::.|..|:  :...|....|:.            .:::.|:...
  Fly   601 IKPPMDNSEEMRLTFPVRDGIILAPFRLL--HNLSVSNHVFHL------------KQNVYNTLMC 651

  Fly   230 EHAIQVQLRFCLVETSCDQEDCFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRPVNVTSNVK 294
            .:.:::||: |..:........:|..|.|..|                      ..|:|:..:.|
  Fly   652 RNDLELQLK-CFHQDDRQMNTNWPHTVTVSAN----------------------ATPLNIERSEK 693

  Fly   295 LSPTV--------------TNTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKTKGVKPADYT 345
            .|..:              |..:|...|   ..|:...:.||.:.:..|:||.:..:.:.|.:::
  Fly   694 NSTALRPLYLKAVCQPGRNTLQLTASSC---CCSHLFVLQLVHRPSVRQVLQTLHKRNLLPLEHS 755

  Fly   346 RGLIKEKLTE-DADCEIATT------------MLKVSLNCPLGKMKMLLPCRASTCSHLQCFDAS 397
            ...||..|:: :|:.....|            ..|:||.||:.|.::.||.|...|.|:||||..
  Fly   756 VQKIKRNLSQPEANAGPDATPQQQQQQGGGQQCAKISLKCPITKSRIRLPARGHECKHVQCFDLE 820

  Fly   398 LYLQMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSSLLKSDDTEIQLHQDGSW----STPGL 458
            .||.:|..:.:|.||.|.|.||.|.|.||.|...:| ::|..||..|:.:....:|    ...|:
  Fly   821 AYLMINSERGSWRCPECSKSAITDTLEIDQYIWAIL-NTLGNSDVDEVIIDSSANWRALQHNGGM 884

  Fly   459 RSETQILDTPSKPA-------------QKVEVISDDIELISDDAKPVKRDLSPAQDEQPTSTSNS 510
            .:.....:.||.|:             ..:.||..  ||..|.||.    :||...:.||..|..
  Fly   885 PNAPPPSNVPSNPSGGSGSNSGNGSVNPTLPVIKQ--ELCDDIAKV----MSPGSTQLPTWDSAQ 943

  Fly   511 ETVDLTLSD--------------------------------SD---------------------- 521
            ......:.|                                ||                      
  Fly   944 AMSPYNMHDMNSIASGNMMGNGGNTNQHGNRSSYDGFSGNHSDGSGGLPGGDGGVNSLDQLNAME 1008

  Fly   522 ----DDMPLAKRRPPAKQ---------AVASS----------TSNGSG------GGQRAYTPAQQ 557
                |.||.....|.|..         :|:||          .:||||      |...:.|....
  Fly  1009 KSLSDQMPHTPHTPGAASHPMTPGGPPSVSSSHNEPISGGTPNANGSGSATNGSGNNNSSTGHNS 1073

  Fly   558 PQQSESPEQQASRQSPEKQTVSEQQLQQQQHEQPATAAVHASLLESLAAAVADQKHFQLLDLAA- 621
            ||...:|.:............|:||.|:|             ||.||.::....| |...||:| 
  Fly  1074 PQTPGTPSRMGGGMGGSGSADSQQQQQEQ-------------LLNSLMSSQTQLK-FSESDLSAE 1124

  Fly   622 ---VAAAAAATASSGQSQN 637
               ..|||||...:....|
  Fly  1125 LQSFDAAAAAINDTAHDLN 1143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)2-10NP_724749.1 SAP 49..83 CDD:128789
PINIT 171..307 CDD:291022 22/156 (14%)
zf-MIZ 368..417 CDD:280964 21/48 (44%)
tnaNP_001368945.1 Med15 216..>604 CDD:312941 17/67 (25%)
SP-RING_ZMIZ 792..839 CDD:319705 21/46 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449144
Domainoid 1 1.000 66 1.000 Domainoid score I2790
eggNOG 1 0.900 - - E1_KOG2169
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10782
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3884
SonicParanoid 00.000 Not matched by this tool.
65.870

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