DRSC/TRiP Functional Genomics Resources

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Protein Alignment Phax and Phax

DIOPT Version :9

Sequence 1:NP_610456.4 Gene:Phax / 35926 FlyBaseID:FBgn0033380 Length:453 Species:Drosophila melanogaster
Sequence 2:NP_775156.2 Gene:Phax / 286917 RGDID:708448 Length:385 Species:Rattus norvegicus


Alignment Length:475 Identity:129/475 - (27%)
Similarity:192/475 - (40%) Gaps:113/475 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MELHANDVDLEDGELSESDDDGVYTPLQRP-------DGAEKVASPLTTCHQIQTALEDESQSNS 59
            |.|.|.  |:|:|:||:||.|....|..||       .|.....:|::....::..  |.|:.:.
  Rat     1 MALEAG--DMEEGQLSDSDSDMTVVPSDRPLQMAKVLGGGGAACAPVSNYRTVKHV--DSSEESL 61

  Fly    60 DSSTAESSEDGCIKKLRTESTGPDGHKKRKKRIRRTVMRRVPPTDAEMQP----------NRARF 114
            |      |:|.|....|          ||:|       ...||...|..|          |..: 
  Rat    62 D------SDDDCSLWKR----------KRQK-------CHSPPPKPEPFPFGQSGQKPALNGGK- 102

  Fly   115 KKYNVWASALQE---DALSENM--RGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSED 174
            |..|:|.:.|||   ||::..:  .|.:.| ..|.|..|.|::.|..:| .:...:.......:|
  Rat   103 KVNNIWGAVLQEQNQDAVATELGILGMEGT-IDRSRQSETYNYLLAKKL-AKKESQEYTKELDKD 165

  Fly   175 GGECSHPAHKRGRPSSRPITGNQQRGL-VKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGER 238
            ..|..|...|.|........|:.:|.. |:.|.|:|..   .:..|..|..|           |.
  Rat   166 LDEYMHGDKKPGSKEEENGQGHLKRKRPVRDRLGNRVE---MNYKGRYDITE-----------ED 216

  Fly   239 DPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRRTPGGVFL 303
            .|..||.|:|.:|.|.|.:|:.|||.:||....:||..||..:|.:||:.|.||.||||||||||
  Rat   217 SPEKVADEIAFRLQEPKKDLIARVVTILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFL 281

  Fly   304 FLIKHHDNITQEQQKRIFSEDRQSLSKSRKQIETLMRDRKVEELKKCLSKQVTELPTLNQRKEYY 368
            .|:|:..:|::||.|.||..:.|...:::|    ..|.|:.:.|.|   |....:.:||     :
  Rat   282 NLLKNTPSISEEQIKDIFYIENQKEYENKK----AARKRRTQLLGK---KMKEAIKSLN-----F 334

  Fly   369 MQGDEQSEDKQPGSLSNPPPSPVGAEQEHDSPEYRTHEININLVDNAELPSTSKAAAAAQGAPLK 433
            .:.|:.|.:.....                     |:|...:|.:..|.|..:|..|       :
  Rat   335 QEDDDTSRETFASD---------------------TNEALASLDEAQEGPGETKLDA-------E 371

  Fly   434 DLISYDHDFLDVNCGDMDFF 453
            |.|..||.      .|:|.|
  Rat   372 DAIEVDHP------QDLDIF 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PhaxNP_610456.4 RNA_GG_bind 243..326 CDD:287260 41/82 (50%)
PhaxNP_775156.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26 11/24 (46%)
Necessary for interaction with CBP80. /evidence=ECO:0000250 2..320 101/340 (30%)
Nuclear localization signal. /evidence=ECO:0000250 71..74 0/2 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 72..101 4/28 (14%)
Nuclear export signal. /evidence=ECO:0000250 120..129 5/11 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 164..192 5/27 (19%)
Nuclear localization signal. /evidence=ECO:0000250 189..192 0/2 (0%)
Sufficient for poly U RNA-binding. /evidence=ECO:0000250 219..319 43/99 (43%)
RNA_GG_bind 221..304 CDD:287260 37/82 (45%)
Necessary for poly U RNA-binding and snRNA export. /evidence=ECO:0000250 270..278 3/7 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 334..385 9/50 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166346270
Domainoid 1 1.000 80 1.000 Domainoid score I8430
eggNOG 1 0.900 - - E1_KOG3948
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 108 1.000 Inparanoid score I4823
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1223195at2759
OrthoFinder 1 1.000 - - FOG0006484
OrthoInspector 1 1.000 - - oto98301
orthoMCL 1 0.900 - - OOG6_107898
Panther 1 1.100 - - LDO PTHR13135
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5458
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.760

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